Chaste Commit::30a3e656d4b131f8c595cc6eb2becd297337570f
AbstractBoxDomainPdeModifier< DIM > Member List

This is the complete list of members for AbstractBoxDomainPdeModifier< DIM >, including all inherited members.

AbstractBoxDomainPdeModifier(boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=boost::shared_ptr< AbstractLinearPde< DIM, DIM > >(), boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, boost::shared_ptr< ChasteCuboid< DIM > > pMeshCuboid=boost::shared_ptr< ChasteCuboid< DIM > >(), double stepSize=1.0, Vec solution=nullptr)AbstractBoxDomainPdeModifier< DIM >
AbstractCellBasedSimulationModifier()AbstractCellBasedSimulationModifier< DIM, DIM >
AbstractPdeModifier(boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=NULL, boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, Vec solution=nullptr)AbstractPdeModifier< DIM >
AreBcsSetOnBoundingSphere() constAbstractBoxDomainPdeModifier< DIM >
AreBcsSetOnBoxBoundary() constAbstractBoxDomainPdeModifier< DIM >
boost::serialization::accessAbstractBoxDomainPdeModifier< DIM >friend
ConstructBoundaryConditionsContainerHelper(AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::shared_ptr< BoundaryConditionsContainer< DIM, DIM, 1 > > pBcc)AbstractBoxDomainPdeModifier< DIM >
GenerateAndReturnFeMesh(boost::shared_ptr< ChasteCuboid< DIM > > pMeshCuboid, double stepSize, TetrahedralMesh< DIM, DIM > *pMesh)AbstractBoxDomainPdeModifier< DIM >
GenerateFeMesh(boost::shared_ptr< ChasteCuboid< DIM > > pMeshCuboid, double stepSize)AbstractBoxDomainPdeModifier< DIM >
GetBoundaryCondition()AbstractPdeModifier< DIM >
GetFeMesh() constAbstractPdeModifier< DIM >
GetIdentifier() constIdentifiable
GetOutputGradient() constAbstractPdeModifier< DIM >
GetPde()AbstractPdeModifier< DIM >
GetSolution()AbstractPdeModifier< DIM >
GetSolution() constAbstractPdeModifier< DIM >
GetStepSize() constAbstractBoxDomainPdeModifier< DIM >
GetTypicalCellRadius() constAbstractBoxDomainPdeModifier< DIM >
GetUseVoronoiCellsForInterpolation() constAbstractBoxDomainPdeModifier< DIM >
HasAveragedSourcePde()AbstractPdeModifier< DIM >
InitialiseCellPdeElementMap(AbstractCellPopulation< DIM, DIM > &rCellPopulation)AbstractBoxDomainPdeModifier< DIM >
IsNeumannBoundaryCondition() constAbstractPdeModifier< DIM >
mCellPdeElementMapAbstractBoxDomainPdeModifier< DIM >protected
mDeleteFeMeshAbstractPdeModifier< DIM >protected
mDependentVariableNameAbstractPdeModifier< DIM >protected
mIsDirichletBoundaryNodeAbstractPdeModifier< DIM >protected
mIsNeumannBoundaryConditionAbstractPdeModifier< DIM >protected
mOutputDirectoryAbstractPdeModifier< DIM >protected
mOutputGradientAbstractPdeModifier< DIM >protected
mOutputSolutionAtPdeNodesAbstractPdeModifier< DIM >protected
mpBoundaryConditionAbstractPdeModifier< DIM >protected
mpFeMeshAbstractPdeModifier< DIM >protected
mpMeshCuboidAbstractBoxDomainPdeModifier< DIM >protected
mpPdeAbstractPdeModifier< DIM >protected
mpVizPdeSolutionResultsFileAbstractPdeModifier< DIM >protected
mSetBcsOnBoundingSphereAbstractBoxDomainPdeModifier< DIM >protected
mSetBcsOnBoxBoundaryAbstractBoxDomainPdeModifier< DIM >protected
mSolutionAbstractPdeModifier< DIM >protected
mStepSizeAbstractBoxDomainPdeModifier< DIM >protected
mTypicalCellRadiusAbstractBoxDomainPdeModifier< DIM >protected
mUseVoronoiCellsForInterpolationAbstractBoxDomainPdeModifier< DIM >protected
OutputSimulationModifierInfo(out_stream &rParamsFile)AbstractCellBasedSimulationModifier< DIM, DIM >
OutputSimulationModifierParameters(out_stream &rParamsFile) overrideAbstractBoxDomainPdeModifier< DIM >virtual
rGetDependentVariableName()AbstractPdeModifier< DIM >
serialize(Archive &archive, const unsigned int version)AbstractBoxDomainPdeModifier< DIM >inlineprivate
SetBcsOnBoundingSphere(bool setBcsOnBoundingSphere)AbstractBoxDomainPdeModifier< DIM >
SetBcsOnBoxBoundary(bool setBcsOnBoxBoundary)AbstractBoxDomainPdeModifier< DIM >
SetDependentVariableName(const std::string &rName)AbstractPdeModifier< DIM >
SetOutputGradient(bool outputGradient)AbstractPdeModifier< DIM >
SetOutputSolutionAtPdeNodes(bool outputSolutionAtPdeNodes)AbstractPdeModifier< DIM >
SetTypicalCellRadius(double typicalCellRadius)AbstractBoxDomainPdeModifier< DIM >
SetupSolve(AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory) overrideAbstractBoxDomainPdeModifier< DIM >
AbstractCellBasedSimulationModifier< DIM, DIM >::SetupSolve(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, std::string outputDirectory)=0AbstractCellBasedSimulationModifier< DIM, DIM >pure virtual
SetUpSourceTermsForAveragedSourcePde(TetrahedralMesh< DIM, DIM > *pMesh, std::map< CellPtr, unsigned > *pCellPdeElementMap=nullptr)AbstractPdeModifier< DIM >
SetUseVoronoiCellsForInterpolation(bool useVoronoiCellsForInterpolation)AbstractBoxDomainPdeModifier< DIM >
TestEllipticBoxDomainPdeModifier (defined in AbstractBoxDomainPdeModifier< DIM >)AbstractBoxDomainPdeModifier< DIM >friend
TestOffLatticeSimulationWithPdes (defined in AbstractBoxDomainPdeModifier< DIM >)AbstractBoxDomainPdeModifier< DIM >friend
TestParabolicBoxDomainPdeModifier (defined in AbstractBoxDomainPdeModifier< DIM >)AbstractBoxDomainPdeModifier< DIM >friend
TidyTemplatedExportIdentifier(std::string identifier) constIdentifiableprivate
UpdateAtEndOfOutputTimeStep(AbstractCellPopulation< DIM, DIM > &rCellPopulation) overrideAbstractPdeModifier< DIM >
AbstractCellBasedSimulationModifier< DIM, DIM >::UpdateAtEndOfOutputTimeStep(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)AbstractCellBasedSimulationModifier< DIM, DIM >inlinevirtual
UpdateAtEndOfSolve(AbstractCellPopulation< DIM, DIM > &rCellPopulation) overrideAbstractPdeModifier< DIM >
AbstractCellBasedSimulationModifier< DIM, DIM >::UpdateAtEndOfSolve(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)AbstractCellBasedSimulationModifier< DIM, DIM >inlinevirtual
UpdateAtEndOfTimeStep(AbstractCellPopulation< DIM, DIM > &rCellPopulation) override=0AbstractPdeModifier< DIM >pure virtual
AbstractCellBasedSimulationModifier< DIM, DIM >::UpdateAtEndOfTimeStep(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)=0AbstractCellBasedSimulationModifier< DIM, DIM >pure virtual
UpdateCellData(AbstractCellPopulation< DIM, DIM > &rCellPopulation)AbstractBoxDomainPdeModifier< DIM >
UpdateCellPdeElementMap(AbstractCellPopulation< DIM, DIM > &rCellPopulation)AbstractBoxDomainPdeModifier< DIM >
~AbstractBoxDomainPdeModifier() override=defaultAbstractBoxDomainPdeModifier< DIM >
~AbstractCellBasedSimulationModifier()AbstractCellBasedSimulationModifier< DIM, DIM >virtual
~AbstractPdeModifier() overrideAbstractPdeModifier< DIM >
~Identifiable()Identifiablevirtual