| AbstractBoxDomainPdeModifier(boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=boost::shared_ptr< AbstractLinearPde< DIM, DIM > >(), boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, boost::shared_ptr< ChasteCuboid< DIM > > pMeshCuboid=boost::shared_ptr< ChasteCuboid< DIM > >(), double stepSize=1.0, Vec solution=nullptr) | AbstractBoxDomainPdeModifier< DIM > | |
| AbstractCellBasedSimulationModifier() | AbstractCellBasedSimulationModifier< DIM, DIM > | |
| AbstractPdeModifier(boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=NULL, boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, Vec solution=nullptr) | AbstractPdeModifier< DIM > | |
| AreBcsSetOnBoundingSphere() const | AbstractBoxDomainPdeModifier< DIM > | |
| AreBcsSetOnBoxBoundary() const | AbstractBoxDomainPdeModifier< DIM > | |
| boost::serialization::access | AbstractBoxDomainPdeModifier< DIM > | friend |
| ConstructBoundaryConditionsContainerHelper(AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::shared_ptr< BoundaryConditionsContainer< DIM, DIM, 1 > > pBcc) | AbstractBoxDomainPdeModifier< DIM > | |
| GenerateAndReturnFeMesh(boost::shared_ptr< ChasteCuboid< DIM > > pMeshCuboid, double stepSize, TetrahedralMesh< DIM, DIM > *pMesh) | AbstractBoxDomainPdeModifier< DIM > | |
| GenerateFeMesh(boost::shared_ptr< ChasteCuboid< DIM > > pMeshCuboid, double stepSize) | AbstractBoxDomainPdeModifier< DIM > | |
| GetBoundaryCondition() | AbstractPdeModifier< DIM > | |
| GetFeMesh() const | AbstractPdeModifier< DIM > | |
| GetIdentifier() const | Identifiable | |
| GetOutputGradient() const | AbstractPdeModifier< DIM > | |
| GetPde() | AbstractPdeModifier< DIM > | |
| GetSolution() | AbstractPdeModifier< DIM > | |
| GetSolution() const | AbstractPdeModifier< DIM > | |
| GetStepSize() const | AbstractBoxDomainPdeModifier< DIM > | |
| GetTypicalCellRadius() const | AbstractBoxDomainPdeModifier< DIM > | |
| GetUseVoronoiCellsForInterpolation() const | AbstractBoxDomainPdeModifier< DIM > | |
| HasAveragedSourcePde() | AbstractPdeModifier< DIM > | |
| InitialiseCellPdeElementMap(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | AbstractBoxDomainPdeModifier< DIM > | |
| IsNeumannBoundaryCondition() const | AbstractPdeModifier< DIM > | |
| mCellPdeElementMap | AbstractBoxDomainPdeModifier< DIM > | protected |
| mDeleteFeMesh | AbstractPdeModifier< DIM > | protected |
| mDependentVariableName | AbstractPdeModifier< DIM > | protected |
| mIsDirichletBoundaryNode | AbstractPdeModifier< DIM > | protected |
| mIsNeumannBoundaryCondition | AbstractPdeModifier< DIM > | protected |
| mOutputDirectory | AbstractPdeModifier< DIM > | protected |
| mOutputGradient | AbstractPdeModifier< DIM > | protected |
| mOutputSolutionAtPdeNodes | AbstractPdeModifier< DIM > | protected |
| mpBoundaryCondition | AbstractPdeModifier< DIM > | protected |
| mpFeMesh | AbstractPdeModifier< DIM > | protected |
| mpMeshCuboid | AbstractBoxDomainPdeModifier< DIM > | protected |
| mpPde | AbstractPdeModifier< DIM > | protected |
| mpVizPdeSolutionResultsFile | AbstractPdeModifier< DIM > | protected |
| mSetBcsOnBoundingSphere | AbstractBoxDomainPdeModifier< DIM > | protected |
| mSetBcsOnBoxBoundary | AbstractBoxDomainPdeModifier< DIM > | protected |
| mSolution | AbstractPdeModifier< DIM > | protected |
| mStepSize | AbstractBoxDomainPdeModifier< DIM > | protected |
| mTypicalCellRadius | AbstractBoxDomainPdeModifier< DIM > | protected |
| mUseVoronoiCellsForInterpolation | AbstractBoxDomainPdeModifier< DIM > | protected |
| OutputSimulationModifierInfo(out_stream &rParamsFile) | AbstractCellBasedSimulationModifier< DIM, DIM > | |
| OutputSimulationModifierParameters(out_stream &rParamsFile) override | AbstractBoxDomainPdeModifier< DIM > | virtual |
| rGetDependentVariableName() | AbstractPdeModifier< DIM > | |
| serialize(Archive &archive, const unsigned int version) | AbstractBoxDomainPdeModifier< DIM > | inlineprivate |
| SetBcsOnBoundingSphere(bool setBcsOnBoundingSphere) | AbstractBoxDomainPdeModifier< DIM > | |
| SetBcsOnBoxBoundary(bool setBcsOnBoxBoundary) | AbstractBoxDomainPdeModifier< DIM > | |
| SetDependentVariableName(const std::string &rName) | AbstractPdeModifier< DIM > | |
| SetOutputGradient(bool outputGradient) | AbstractPdeModifier< DIM > | |
| SetOutputSolutionAtPdeNodes(bool outputSolutionAtPdeNodes) | AbstractPdeModifier< DIM > | |
| SetTypicalCellRadius(double typicalCellRadius) | AbstractBoxDomainPdeModifier< DIM > | |
| SetupSolve(AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory) override | AbstractBoxDomainPdeModifier< DIM > | |
| AbstractCellBasedSimulationModifier< DIM, DIM >::SetupSolve(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, std::string outputDirectory)=0 | AbstractCellBasedSimulationModifier< DIM, DIM > | pure virtual |
| SetUpSourceTermsForAveragedSourcePde(TetrahedralMesh< DIM, DIM > *pMesh, std::map< CellPtr, unsigned > *pCellPdeElementMap=nullptr) | AbstractPdeModifier< DIM > | |
| SetUseVoronoiCellsForInterpolation(bool useVoronoiCellsForInterpolation) | AbstractBoxDomainPdeModifier< DIM > | |
| TestEllipticBoxDomainPdeModifier (defined in AbstractBoxDomainPdeModifier< DIM >) | AbstractBoxDomainPdeModifier< DIM > | friend |
| TestOffLatticeSimulationWithPdes (defined in AbstractBoxDomainPdeModifier< DIM >) | AbstractBoxDomainPdeModifier< DIM > | friend |
| TestParabolicBoxDomainPdeModifier (defined in AbstractBoxDomainPdeModifier< DIM >) | AbstractBoxDomainPdeModifier< DIM > | friend |
| TidyTemplatedExportIdentifier(std::string identifier) const | Identifiable | private |
| UpdateAtEndOfOutputTimeStep(AbstractCellPopulation< DIM, DIM > &rCellPopulation) override | AbstractPdeModifier< DIM > | |
| AbstractCellBasedSimulationModifier< DIM, DIM >::UpdateAtEndOfOutputTimeStep(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation) | AbstractCellBasedSimulationModifier< DIM, DIM > | inlinevirtual |
| UpdateAtEndOfSolve(AbstractCellPopulation< DIM, DIM > &rCellPopulation) override | AbstractPdeModifier< DIM > | |
| AbstractCellBasedSimulationModifier< DIM, DIM >::UpdateAtEndOfSolve(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation) | AbstractCellBasedSimulationModifier< DIM, DIM > | inlinevirtual |
| UpdateAtEndOfTimeStep(AbstractCellPopulation< DIM, DIM > &rCellPopulation) override=0 | AbstractPdeModifier< DIM > | pure virtual |
| AbstractCellBasedSimulationModifier< DIM, DIM >::UpdateAtEndOfTimeStep(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)=0 | AbstractCellBasedSimulationModifier< DIM, DIM > | pure virtual |
| UpdateCellData(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | AbstractBoxDomainPdeModifier< DIM > | |
| UpdateCellPdeElementMap(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | AbstractBoxDomainPdeModifier< DIM > | |
| ~AbstractBoxDomainPdeModifier() override=default | AbstractBoxDomainPdeModifier< DIM > | |
| ~AbstractCellBasedSimulationModifier() | AbstractCellBasedSimulationModifier< DIM, DIM > | virtual |
| ~AbstractPdeModifier() override | AbstractPdeModifier< DIM > | |
| ~Identifiable() | Identifiable | virtual |
1.9.8