AbstractCellBasedSimulation(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
AddCellKiller(boost::shared_ptr< AbstractCellKiller< SPACE_DIM > > pCellKiller) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
AddSimulationModifier(boost::shared_ptr< AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM > > pSimulationModifier) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
AddTopologyUpdateSimulationModifier(boost::shared_ptr< AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM > > pSimulationModifier) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
boost::serialization::access | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | friend |
DoCellBirth() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
DoCellRemoval() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
GetDt() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetIdentifier() const | Identifiable | |
GetNodeLocation(const unsigned &rNodeIndex) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetNumBirths() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetNumDeaths() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetOutputCellVelocities() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetOutputDirectory() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetOutputDivisionLocations() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetSimulationModifiers() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetTopologyUpdateSimulationModifiers() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
GetUpdateCellPopulationRule() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
mCellKillers | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mDeleteCellPopulationInDestructor | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mDt | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mEndTime | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mInitialiseCells | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mNoBirth | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mNumBirths | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mNumDeaths | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mOutputCellVelocities | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mOutputDirectory | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mOutputDivisionLocations | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mpCellVelocitiesFile | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mpDivisionLocationFile | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mpVizSetupFile | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mrCellPopulation | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mSamplingTimestepMultiple | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mSimulationModifiers | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mSimulationOutputDirectory | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mTopologyUpdateSimulationModifiers | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mUpdateCellPopulation | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
mUpdatingTimestepMultiple | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
OutputAdditionalSimulationSetup(out_stream &rParamsFile)=0 | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protectedpure virtual |
OutputSimulationParameters(out_stream &rParamsFile)=0 | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | pure virtual |
OutputSimulationSetup() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protected |
RemoveAllCellKillers() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
rGetCellPopulation() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
rGetCellPopulation() const | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
serialize(Archive &archive, const unsigned int version) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | inlineprivate |
SetDt(double dt) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetEndTime(double endTime) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetNoBirth(bool noBirth) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetOutputCellVelocities(bool outputCellVelocities) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetOutputDirectory(std::string outputDirectory) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetOutputDivisionLocations(bool outputDivisionLocations) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetUpdateCellPopulationRule(bool updateCellPopulation) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetUpdatingTimestepMultiple(unsigned updatingTimestepMultiple) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
SetupSolve() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | inlineprotectedvirtual |
Solve() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | |
StoppingEventHasOccurred() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
TestCryptSimulation2d (defined in AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | friend |
TestOffLatticeSimulation (defined in AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | friend |
TestOffLatticeSimulation3d (defined in AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >) | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | friend |
TidyTemplatedExportIdentifier(std::string identifier) const | Identifiable | private |
UpdateCellLocationsAndTopology()=0 | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protectedpure virtual |
UpdateCellPopulation() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
WriteVisualizerSetupFile() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | inlineprotectedvirtual |
~AbstractCellBasedSimulation() | AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > | virtual |
~Identifiable() | Identifiable | virtual |