| AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCellInterface | |
| AbstractCvodeCell(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCvodeCell | |
| AbstractCvodeSystem(unsigned numberOfStateVariables) | AbstractCvodeSystem | |
| AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< N_Vector > | |
| AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
| boost::serialization::access | AbstractCvodeCell | friend |
| CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< N_Vector > | protected |
| Compute(double tStart, double tEnd, double tSamp=0.0) | AbstractCvodeCell | virtual |
| ComputeDerivedQuantities(double time, const N_Vector &rState) | AbstractParameterisedSystem< N_Vector > | virtual |
| ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< N_Vector > | |
| ComputeExceptVoltage(double tStart, double tEnd) | AbstractCvodeCell | virtual |
| CvodeError(int flag, const char *msg, const double &rTime, const double &rStartTime, const double &rEndTime) | AbstractCvodeSystem | private |
| DumpState(const std::string &rMessage) | AbstractParameterisedSystem< N_Vector > | protected |
| DumpState(const std::string &rMessage, N_Vector Y) | AbstractParameterisedSystem< N_Vector > | protected |
| DumpState(const std::string &rMessage, N_Vector Y, double time) | AbstractParameterisedSystem< N_Vector > | protected |
| EvaluateAnalyticJacobian(realtype time, N_Vector y, N_Vector ydot, CHASTE_CVODE_DENSE_MATRIX jacobian, N_Vector tmp1, N_Vector tmp2, N_Vector tmp3) | AbstractCvodeSystem | inlinevirtual |
| EvaluateYDerivatives(realtype time, const N_Vector y, N_Vector ydot)=0 | AbstractCvodeSystem | pure virtual |
| ForceUseOfNumericalJacobian(bool useNumericalJacobian=true) | AbstractCvodeSystem | |
| FreeCvodeMemory() | AbstractCvodeSystem | private |
| GetAbsoluteTolerance() | AbstractCvodeSystem | |
| GetAnyVariable(const std::string &rName, double time=0.0) | AbstractCvodeCell | virtual |
| AbstractCvodeSystem::GetAnyVariable(unsigned index, double time=0.0, N_Vector *pDerivedQuantities=NULL) | AbstractParameterisedSystem< N_Vector > | |
| AbstractCvodeSystem::GetAnyVariable(const std::string &rName, double time=0.0, N_Vector *pDerivedQuantities=NULL) | AbstractParameterisedSystem< N_Vector > | |
| GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetForceReset() | AbstractCvodeSystem | |
| GetIIonic(const std::vector< double > *pStateVariables=NULL)=0 | AbstractCardiacCellInterface | pure virtual |
| GetInitialConditions() const | AbstractParameterisedSystem< N_Vector > | |
| GetIntracellularAreaStimulus(double time) | AbstractCardiacCellInterface | |
| GetIntracellularCalciumConcentration() | AbstractCardiacCellInterface | virtual |
| GetIntracellularStimulus(double time) | AbstractCardiacCellInterface | |
| GetLastStepSize() | AbstractCvodeSystem | |
| GetLookupTableCollection() | AbstractCardiacCellInterface | inlinevirtual |
| GetMaxSteps() | AbstractCvodeSystem | |
| GetMinimalReset() | AbstractCvodeSystem | |
| GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfParameters() const | AbstractCvodeCell | virtual |
| GetNumberOfStateVariables() const | AbstractCvodeCell | virtual |
| GetParameter(const std::string &rParameterName) | AbstractCvodeCell | virtual |
| GetParameter(unsigned parameterIndex) | AbstractCvodeCell | virtual |
| AbstractCvodeSystem::GetParameter(unsigned index) const | AbstractParameterisedSystem< N_Vector > | |
| AbstractCvodeSystem::GetParameter(const std::string &rName) const | AbstractParameterisedSystem< N_Vector > | |
| GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetRelativeTolerance() | AbstractCvodeSystem | |
| GetSolver() const | AbstractCardiacCellInterface | |
| GetStateMessage(const std::string &rMessage, N_Vector Y) | AbstractParameterisedSystem< N_Vector > | private |
| GetStateVariable(unsigned index) const | AbstractParameterisedSystem< N_Vector > | |
| GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< N_Vector > | |
| GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetStateVariables() | AbstractParameterisedSystem< N_Vector > | |
| GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetStdVecStateVariables() | AbstractCvodeCell | virtual |
| GetStimulus(double time) | AbstractCardiacCellInterface | |
| GetStimulusFunction() | AbstractCardiacCellInterface | |
| GetStimulusFunction() const | AbstractCardiacCellInterface | |
| GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
| GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
| GetTimestep() | AbstractCvodeCell | |
| GetUseAnalyticJacobian() const | AbstractCvodeSystem | |
| GetVoltage() | AbstractCvodeCell | virtual |
| GetVoltageIndex() | AbstractCardiacCellInterface | |
| HasAnalyticJacobian() const | AbstractCvodeSystem | |
| HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasCellMLDefaultStimulus() | AbstractCardiacCellInterface | |
| HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| Init() | AbstractCvodeSystem | protected |
| load(Archive &archive, const unsigned int version) | AbstractCvodeSystem | inlineprivate |
| mAbsTol | AbstractCvodeSystem | protected |
| mFixedVoltage | AbstractCardiacCellInterface | protected |
| mForceMinimalReset | AbstractCvodeSystem | private |
| mForceReset | AbstractCvodeSystem | private |
| mHasAnalyticJacobian | AbstractCvodeSystem | protected |
| mHasDefaultStimulusFromCellML | AbstractCardiacCellInterface | protected |
| mIsUsedInTissue | AbstractCardiacCellInterface | protected |
| mLastInternalStepSize | AbstractCvodeSystem | protected |
| mLastSolutionState | AbstractCvodeSystem | private |
| mLastSolutionTime | AbstractCvodeSystem | private |
| mMaxDt | AbstractCvodeCell | protected |
| mMaxSteps | AbstractCvodeSystem | protected |
| mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | protected |
| mParameters | AbstractParameterisedSystem< N_Vector > | protected |
| mpCvodeMem | AbstractCvodeSystem | protected |
| mpIntracellularStimulus | AbstractCardiacCellInterface | protected |
| mpOdeSolver | AbstractCardiacCellInterface | protected |
| mpSystemInfo | AbstractUntemplatedParameterisedSystem | protected |
| mRelTol | AbstractCvodeSystem | protected |
| mSetVoltageDerivativeToZero | AbstractCardiacCellInterface | protected |
| mStateVariables | AbstractParameterisedSystem< N_Vector > | protected |
| mUseAnalyticJacobian | AbstractCvodeSystem | protected |
| mVoltageIndex | AbstractCardiacCellInterface | protected |
| RecordStoppingPoint(double stopTime) | AbstractCvodeSystem | private |
| ResetSolver() | AbstractCvodeSystem | |
| ResetToInitialConditions() | AbstractParameterisedSystem< N_Vector > | virtual |
| rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariableNames() const | AbstractCvodeCell | virtual |
| rGetStateVariables() | AbstractParameterisedSystem< N_Vector > | |
| rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
| save(Archive &archive, const unsigned int version) const | AbstractCvodeSystem | inlineprivate |
| serialize(Archive &archive, const unsigned int version) | AbstractCvodeCell | inlineprivate |
| SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< N_Vector > | |
| SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< N_Vector > | |
| SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< N_Vector > | |
| SetDefaultInitialConditions(const N_Vector &rInitialConditions) | AbstractParameterisedSystem< N_Vector > | |
| SetFixedVoltage(double voltage) | AbstractCardiacCellInterface | |
| SetForceReset(bool autoReset) | AbstractCvodeSystem | |
| SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
| SetMaxSteps(long int numSteps) | AbstractCvodeSystem | |
| SetMaxTimestep(double maxDt) | AbstractCvodeCell | |
| SetMinimalReset(bool minimalReset) | AbstractCvodeSystem | |
| SetParameter(const std::string &rParameterName, double value) | AbstractCvodeCell | virtual |
| AbstractCvodeSystem::SetParameter(unsigned index, double value) | AbstractParameterisedSystem< N_Vector > | |
| SetSolver(boost::shared_ptr< AbstractIvpOdeSolver > pSolver) | AbstractCardiacCellInterface | |
| SetStateVariable(unsigned index, double newValue) | AbstractCvodeCell | virtual |
| SetStateVariable(const std::string &rName, double newValue) | AbstractCvodeCell | virtual |
| SetStateVariables(const std::vector< double > &rVariables) | AbstractCvodeCell | virtual |
| SetStateVariables(const N_Vector &rVariables) | AbstractCvodeCell | |
| AbstractCvodeSystem::SetStateVariables(const N_Vector &rStateVariables) | AbstractParameterisedSystem< N_Vector > | |
| SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
| SetStretch(double stretch) | AbstractCardiacCellInterface | inlinevirtual |
| SetTimestep(double maxDt) | AbstractCvodeCell | virtual |
| SetTolerances(double relTol=1e-5, double absTol=1e-7) | AbstractCvodeSystem | |
| SetupCvode(N_Vector initialConditions, realtype tStart, realtype maxDt) | AbstractCvodeSystem | private |
| SetUsedInTissueSimulation(bool tissue=true) | AbstractCardiacCellInterface | |
| SetVoltage(double voltage) | AbstractCvodeCell | virtual |
| SetVoltageDerivativeToZero(bool clamp=true) | AbstractCvodeCell | virtual |
| Solve(realtype tStart, realtype tEnd, realtype maxDt, realtype tSamp) | AbstractCvodeSystem | |
| Solve(realtype tStart, realtype tEnd, realtype maxDt) | AbstractCvodeSystem | |
| SolveAndUpdateState(double tStart, double tEnd) | AbstractCvodeCell | virtual |
| UseCellMLDefaultStimulus() | AbstractCardiacCellInterface | virtual |
| VerifyStateVariables() | AbstractParameterisedSystem< N_Vector > | inlinevirtual |
| ~AbstractCardiacCellInterface() | AbstractCardiacCellInterface | virtual |
| ~AbstractCvodeCell() | AbstractCvodeCell | virtual |
| ~AbstractCvodeSystem() | AbstractCvodeSystem | virtual |
| ~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | virtual |
1.9.8