Chaste Commit::1fd4e48e3990e67db148bc1bc4cf6991a0049d0c
AbstractCvodeCellWithDataClamp Member List

This is the complete list of members for AbstractCvodeCellWithDataClamp, including all inherited members.

AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCardiacCellInterface
AbstractCvodeCell(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCvodeCell
AbstractCvodeCellWithDataClamp(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCvodeCellWithDataClamp
AbstractCvodeSystem(unsigned numberOfStateVariables)AbstractCvodeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< N_Vector >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
boost::serialization::accessAbstractCvodeCellWithDataClampfriend
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)AbstractParameterisedSystem< N_Vector >protected
Compute(double tStart, double tEnd, double tSamp=0.0)AbstractCvodeCellvirtual
ComputeDerivedQuantities(double time, const N_Vector &rState)AbstractParameterisedSystem< N_Vector >virtual
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< N_Vector >
ComputeExceptVoltage(double tStart, double tEnd)AbstractCvodeCellvirtual
CvodeError(int flag, const char *msg, const double &rTime, const double &rStartTime, const double &rEndTime)AbstractCvodeSystemprivate
DumpState(const std::string &rMessage)AbstractParameterisedSystem< N_Vector >protected
DumpState(const std::string &rMessage, N_Vector Y)AbstractParameterisedSystem< N_Vector >protected
DumpState(const std::string &rMessage, N_Vector Y, double time)AbstractParameterisedSystem< N_Vector >protected
EvaluateAnalyticJacobian(realtype time, N_Vector y, N_Vector ydot, CHASTE_CVODE_DENSE_MATRIX jacobian, N_Vector tmp1, N_Vector tmp2, N_Vector tmp3)AbstractCvodeSysteminlinevirtual
EvaluateYDerivatives(realtype time, const N_Vector y, N_Vector ydot)=0AbstractCvodeSystempure virtual
ForceUseOfNumericalJacobian(bool useNumericalJacobian=true)AbstractCvodeSystem
FreeCvodeMemory()AbstractCvodeSystemprivate
GetAbsoluteTolerance()AbstractCvodeSystem
GetAnyVariable(const std::string &rName, double time=0.0)AbstractCvodeCellvirtual
AbstractCvodeSystem::GetAnyVariable(unsigned index, double time=0.0, N_Vector *pDerivedQuantities=NULL)AbstractParameterisedSystem< N_Vector >
AbstractCvodeSystem::GetAnyVariable(const std::string &rName, double time=0.0, N_Vector *pDerivedQuantities=NULL)AbstractParameterisedSystem< N_Vector >
GetAnyVariableIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetDerivedQuantityIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetExperimentalVoltageAtTimeT(const double &rTime)AbstractCvodeCellWithDataClampprotected
GetForceReset()AbstractCvodeSystem
GetIIonic(const std::vector< double > *pStateVariables=NULL)=0AbstractCardiacCellInterfacepure virtual
GetInitialConditions() constAbstractParameterisedSystem< N_Vector >
GetIntracellularAreaStimulus(double time)AbstractCardiacCellInterface
GetIntracellularCalciumConcentration()AbstractCardiacCellInterfacevirtual
GetIntracellularStimulus(double time)AbstractCardiacCellInterface
GetLastStepSize()AbstractCvodeSystem
GetLookupTableCollection()AbstractCardiacCellInterfaceinlinevirtual
GetMaxSteps()AbstractCvodeSystem
GetMinimalReset()AbstractCvodeSystem
GetNumberOfAttributes() constAbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() constAbstractUntemplatedParameterisedSystem
GetNumberOfParameters() constAbstractCvodeCellvirtual
GetNumberOfStateVariables() constAbstractCvodeCellvirtual
GetParameter(const std::string &rParameterName)AbstractCvodeCellvirtual
GetParameter(unsigned parameterIndex)AbstractCvodeCellvirtual
AbstractCvodeSystem::GetParameter(unsigned index) constAbstractParameterisedSystem< N_Vector >
AbstractCvodeSystem::GetParameter(const std::string &rName) constAbstractParameterisedSystem< N_Vector >
GetParameterIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetRelativeTolerance()AbstractCvodeSystem
GetSolver() constAbstractCardiacCellInterface
GetStateMessage(const std::string &rMessage, N_Vector Y)AbstractParameterisedSystem< N_Vector >private
GetStateVariable(unsigned index) constAbstractParameterisedSystem< N_Vector >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< N_Vector >
GetStateVariableIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< N_Vector >
GetStateVariableUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetStdVecStateVariables()AbstractCvodeCellvirtual
GetStimulus(double time)AbstractCardiacCellInterface
GetStimulusFunction()AbstractCardiacCellInterface
GetStimulusFunction() constAbstractCardiacCellInterface
GetSystemInformation() constAbstractUntemplatedParameterisedSystem
GetSystemName() constAbstractUntemplatedParameterisedSystem
GetTimestep()AbstractCvodeCell
GetUseAnalyticJacobian() constAbstractCvodeSystem
GetVoltage()AbstractCvodeCellvirtual
GetVoltageIndex()AbstractCardiacCellInterface
HasAnalyticJacobian() constAbstractCvodeSystem
HasAnyVariable(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasCellMLDefaultStimulus()AbstractCardiacCellInterface
HasDerivedQuantity(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) constAbstractUntemplatedParameterisedSystem
Init()AbstractCvodeSystemprotected
load(Archive &archive, const unsigned int version)AbstractCvodeSysteminlineprivate
mAbsTolAbstractCvodeSystemprotected
mDataAvailableAbstractCvodeCellWithDataClampprivate
mDataClampIsOnAbstractCvodeCellWithDataClampprotected
mExperimentalTimesAbstractCvodeCellWithDataClampprivate
mExperimentalVoltagesAbstractCvodeCellWithDataClampprivate
mFixedVoltageAbstractCardiacCellInterfaceprotected
mForceMinimalResetAbstractCvodeSystemprivate
mForceResetAbstractCvodeSystemprivate
mHasAnalyticJacobianAbstractCvodeSystemprotected
mHasDefaultStimulusFromCellMLAbstractCardiacCellInterfaceprotected
mIsUsedInTissueAbstractCardiacCellInterfaceprotected
mLastInternalStepSizeAbstractCvodeSystemprotected
mLastSolutionStateAbstractCvodeSystemprivate
mLastSolutionTimeAbstractCvodeSystemprivate
mMaxDtAbstractCvodeCellprotected
mMaxStepsAbstractCvodeSystemprotected
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystemprotected
mParametersAbstractParameterisedSystem< N_Vector >protected
mpCvodeMemAbstractCvodeSystemprotected
mpIntracellularStimulusAbstractCardiacCellInterfaceprotected
mpOdeSolverAbstractCardiacCellInterfaceprotected
mpSystemInfoAbstractUntemplatedParameterisedSystemprotected
mRelTolAbstractCvodeSystemprotected
mSetVoltageDerivativeToZeroAbstractCardiacCellInterfaceprotected
mStateVariablesAbstractParameterisedSystem< N_Vector >protected
mUseAnalyticJacobianAbstractCvodeSystemprotected
mVoltageIndexAbstractCardiacCellInterfaceprotected
RecordStoppingPoint(double stopTime)AbstractCvodeSystemprivate
ResetSolver()AbstractCvodeSystem
ResetToInitialConditions()AbstractParameterisedSystem< N_Vector >virtual
rGetDerivedQuantityNames() constAbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() constAbstractUntemplatedParameterisedSystem
rGetParameterNames() constAbstractUntemplatedParameterisedSystem
rGetParameterUnits() constAbstractUntemplatedParameterisedSystem
rGetStateVariableNames() constAbstractCvodeCellvirtual
rGetStateVariables()AbstractParameterisedSystem< N_Vector >
rGetStateVariableUnits() constAbstractUntemplatedParameterisedSystem
save(Archive &archive, const unsigned int version) constAbstractCvodeSysteminlineprivate
serialize(Archive &archive, const unsigned int version)AbstractCvodeCellWithDataClampinlineprivate
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< N_Vector >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< N_Vector >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< N_Vector >
SetDefaultInitialConditions(const N_Vector &rInitialConditions)AbstractParameterisedSystem< N_Vector >
SetExperimentalData(std::vector< double > experimentalTimes, std::vector< double > experimentalVoltages)AbstractCvodeCellWithDataClamp
SetFixedVoltage(double voltage)AbstractCardiacCellInterface
SetForceReset(bool autoReset)AbstractCvodeSystem
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetMaxSteps(long int numSteps)AbstractCvodeSystem
SetMaxTimestep(double maxDt)AbstractCvodeCell
SetMinimalReset(bool minimalReset)AbstractCvodeSystem
SetParameter(const std::string &rParameterName, double value)AbstractCvodeCellvirtual
AbstractCvodeSystem::SetParameter(unsigned index, double value)AbstractParameterisedSystem< N_Vector >
SetSolver(boost::shared_ptr< AbstractIvpOdeSolver > pSolver)AbstractCardiacCellInterface
SetStateVariable(unsigned index, double newValue)AbstractCvodeCellvirtual
SetStateVariable(const std::string &rName, double newValue)AbstractCvodeCellvirtual
SetStateVariables(const std::vector< double > &rVariables)AbstractCvodeCellvirtual
SetStateVariables(const N_Vector &rVariables)AbstractCvodeCell
AbstractCvodeSystem::SetStateVariables(const N_Vector &rStateVariables)AbstractParameterisedSystem< N_Vector >
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetStretch(double stretch)AbstractCardiacCellInterfaceinlinevirtual
SetTimestep(double maxDt)AbstractCvodeCellvirtual
SetTolerances(double relTol=1e-5, double absTol=1e-7)AbstractCvodeSystem
SetupCvode(N_Vector initialConditions, realtype tStart, realtype maxDt)AbstractCvodeSystemprivate
SetUsedInTissueSimulation(bool tissue=true)AbstractCardiacCellInterface
SetVoltage(double voltage)AbstractCvodeCellvirtual
SetVoltageDerivativeToZero(bool clamp=true)AbstractCvodeCellvirtual
Solve(realtype tStart, realtype tEnd, realtype maxDt, realtype tSamp)AbstractCvodeSystem
Solve(realtype tStart, realtype tEnd, realtype maxDt)AbstractCvodeSystem
SolveAndUpdateState(double tStart, double tEnd)AbstractCvodeCellvirtual
TestCvodeCellsWithDataClampAbstractCvodeCellWithDataClampfriend
TurnOffDataClamp()AbstractCvodeCellWithDataClamp
TurnOnDataClamp(double conductance=100)AbstractCvodeCellWithDataClamp
UseCellMLDefaultStimulus()AbstractCardiacCellInterfacevirtual
VerifyStateVariables()AbstractParameterisedSystem< N_Vector >inlinevirtual
~AbstractCardiacCellInterface()AbstractCardiacCellInterfacevirtual
~AbstractCvodeCell()AbstractCvodeCellvirtual
~AbstractCvodeCellWithDataClamp()AbstractCvodeCellWithDataClampvirtual
~AbstractCvodeSystem()AbstractCvodeSystemvirtual
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystemvirtual