Chaste Commit::1fd4e48e3990e67db148bc1bc4cf6991a0049d0c
AbstractOdeBasedPhaseBasedCellCycleModel Member List

This is the complete list of members for AbstractOdeBasedPhaseBasedCellCycleModel, including all inherited members.

AbstractCellCycleModel(const AbstractCellCycleModel &rModel)AbstractCellCycleModelprotected
AbstractCellCycleModel()AbstractCellCycleModel
AbstractOdeBasedPhaseBasedCellCycleModel(const AbstractOdeBasedPhaseBasedCellCycleModel &rModel)AbstractOdeBasedPhaseBasedCellCycleModelprotected
AbstractOdeBasedPhaseBasedCellCycleModel(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())AbstractOdeBasedPhaseBasedCellCycleModel
AbstractPhaseBasedCellCycleModel(const AbstractPhaseBasedCellCycleModel &rModel)AbstractPhaseBasedCellCycleModelprotected
AbstractPhaseBasedCellCycleModel()AbstractPhaseBasedCellCycleModel
AdjustOdeParameters(double currentTime)CellCycleModelOdeHandlerprotectedvirtual
boost::serialization::accessAbstractOdeBasedPhaseBasedCellCycleModelfriend
CanCellTerminallyDifferentiate()AbstractCellCycleModelvirtual
CellCycleModelOdeHandler(const CellCycleModelOdeHandler &rHandler)CellCycleModelOdeHandlerprotected
CellCycleModelOdeHandler(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())CellCycleModelOdeHandler
CreateCellCycleModel()=0AbstractCellCycleModelpure virtual
GetAge()AbstractCellCycleModel
GetAverageStemCellCycleTime()AbstractPhaseBasedCellCycleModelvirtual
GetAverageTransitCellCycleTime()AbstractPhaseBasedCellCycleModelvirtual
GetBirthTime() constAbstractCellCycleModel
GetCell()AbstractCellCycleModel
GetCurrentCellCyclePhase() constAbstractPhaseBasedCellCycleModel
GetDimension() constAbstractCellCycleModel
GetDt()CellCycleModelOdeHandler
GetG1Duration() constAbstractPhaseBasedCellCycleModelvirtual
GetG2Duration() constAbstractPhaseBasedCellCycleModelvirtual
GetIdentifier() constIdentifiable
GetMDuration() constAbstractPhaseBasedCellCycleModelvirtual
GetMinimumGapDuration() constAbstractPhaseBasedCellCycleModel
GetOdeSolver() constCellCycleModelOdeHandler
GetOdeStopTime()AbstractOdeBasedPhaseBasedCellCycleModel
GetOdeSystem() constCellCycleModelOdeHandler
GetProteinConcentrations() constCellCycleModelOdeHandler
GetSDuration() constAbstractPhaseBasedCellCycleModelvirtual
GetSG2MDuration() constAbstractPhaseBasedCellCycleModel
GetStemCellG1Duration() constAbstractPhaseBasedCellCycleModel
GetTransitCellG1Duration() constAbstractPhaseBasedCellCycleModel
Initialise()AbstractCellCycleModelvirtual
InitialiseDaughterCell()AbstractCellCycleModelvirtual
mBirthTimeAbstractCellCycleModelprotected
mCurrentCellCyclePhaseAbstractPhaseBasedCellCycleModelprotected
mDimensionAbstractCellCycleModelprotected
mDivideTimeAbstractOdeBasedPhaseBasedCellCycleModelprotected
mDtCellCycleModelOdeHandlerprotected
mFinishedRunningOdesCellCycleModelOdeHandlerprotected
mG1DurationAbstractPhaseBasedCellCycleModelprotected
mG2DurationAbstractPhaseBasedCellCycleModelprotected
mG2PhaseStartTimeAbstractOdeBasedPhaseBasedCellCycleModelprotected
mLastTimeCellCycleModelOdeHandlerprotected
mMDurationAbstractPhaseBasedCellCycleModelprotected
mMinimumGapDurationAbstractPhaseBasedCellCycleModelprotected
mpCellAbstractCellCycleModelprotected
mpOdeSolverCellCycleModelOdeHandlerprotected
mpOdeSystemCellCycleModelOdeHandlerprotected
mReadyToDivideAbstractCellCycleModelprotected
mSDurationAbstractPhaseBasedCellCycleModelprotected
mStemCellG1DurationAbstractPhaseBasedCellCycleModelprotected
mTransitCellG1DurationAbstractPhaseBasedCellCycleModelprotected
AbstractPhaseBasedCellCycleModel::operator=(const AbstractCellCycleModel &)AbstractCellCycleModelprivate
OutputCellCycleModelInfo(out_stream &rParamsFile)AbstractCellCycleModel
OutputCellCycleModelParameters(out_stream &rParamsFile)AbstractOdeBasedPhaseBasedCellCycleModelvirtual
ReadyToDivide()AbstractPhaseBasedCellCycleModelvirtual
ResetForDivision()AbstractOdeBasedPhaseBasedCellCycleModelvirtual
serialize(Archive &archive, const unsigned int version)AbstractOdeBasedPhaseBasedCellCycleModelinlineprivate
SetBirthTime(double birthTime)AbstractOdeBasedPhaseBasedCellCycleModelvirtual
SetCell(CellPtr pCell)AbstractCellCycleModel
SetDimension(unsigned dimension)AbstractCellCycleModel
SetDt(double timeStep)CellCycleModelOdeHandler
SetG2Duration(double g2Duration)AbstractPhaseBasedCellCycleModel
SetLastTime(double lastTime)CellCycleModelOdeHandler
SetMDuration(double mDuration)AbstractPhaseBasedCellCycleModel
SetMinimumGapDuration(double minimumGapDuration)AbstractPhaseBasedCellCycleModel
SetOdeSystem(AbstractOdeSystem *pOdeSystem)CellCycleModelOdeHandler
SetProteinConcentrationsForTestsOnly(double lastTime, std::vector< double > proteinConcentrations)CellCycleModelOdeHandler
SetSDuration(double sDuration)AbstractPhaseBasedCellCycleModel
SetStateVariables(const std::vector< double > &rStateVariables)CellCycleModelOdeHandler
SetStemCellG1Duration(double stemCellG1Duration)AbstractPhaseBasedCellCycleModelvirtual
SetTransitCellG1Duration(double transitCellG1Duration)AbstractPhaseBasedCellCycleModelvirtual
SolveOdeToTime(double currentTime)CellCycleModelOdeHandlerprotected
TidyTemplatedExportIdentifier(std::string identifier) constIdentifiableprivate
UpdateCellCyclePhase()AbstractOdeBasedPhaseBasedCellCycleModelvirtual
~AbstractCellCycleModel()AbstractCellCycleModelvirtual
~AbstractOdeBasedPhaseBasedCellCycleModel()AbstractOdeBasedPhaseBasedCellCycleModelvirtual
~AbstractPhaseBasedCellCycleModel()AbstractPhaseBasedCellCycleModelvirtual
~CellCycleModelOdeHandler()CellCycleModelOdeHandlervirtual
~Identifiable()Identifiablevirtual