AbstractOdeSrnModel Member List

This is the complete list of members for AbstractOdeSrnModel, including all inherited members.

AbstractOdeSrnModel(const AbstractOdeSrnModel &rModel)	AbstractOdeSrnModel	protected
AbstractOdeSrnModel(unsigned stateSize, boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())	AbstractOdeSrnModel
AbstractSrnModel(const AbstractSrnModel &rModel)	AbstractSrnModel	protected
AbstractSrnModel()	AbstractSrnModel
AddMergedEdgeSrn(AbstractSrnModel *pMergedEdgeSrn)	AbstractSrnModel	virtual
AddShrunkEdgeSrn(AbstractSrnModel *pShrunkEdgeSrn)	AbstractSrnModel	virtual
AddShrunkEdgeToInterior(AbstractSrnModel *pShrunkEdgeSrn)	AbstractSrnModel	virtual
AddSrnQuantities(AbstractSrnModel *pOtherSrn, const double scale=1.0)	AbstractSrnModel	virtual
AdjustOdeParameters(double currentTime)	CellCycleModelOdeHandler	protectedvirtual
boost::serialization::access	AbstractOdeSrnModel	friend
CellCycleModelOdeHandler(const CellCycleModelOdeHandler &rHandler)	CellCycleModelOdeHandler	protected
CellCycleModelOdeHandler(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())	CellCycleModelOdeHandler
CreateSrnModel()=0	AbstractSrnModel	pure virtual
GetCell()	AbstractSrnModel
GetDt()	CellCycleModelOdeHandler
GetEdgeLocalIndex()	AbstractSrnModel
GetIdentifier() const	Identifiable
GetOdeSolver() const	CellCycleModelOdeHandler
GetOdeSystem() const	CellCycleModelOdeHandler
GetProteinConcentrations() const	CellCycleModelOdeHandler
GetSimulatedToTime() const	AbstractSrnModel
HasEdgeModel() const	AbstractSrnModel
Initialise(AbstractOdeSystem *pOdeSystem)	AbstractOdeSrnModel	protected
Initialise()	AbstractOdeSrnModel	protectedvirtual
InitialiseDaughterCell()	AbstractSrnModel	virtual
mDt	CellCycleModelOdeHandler	protected
mEdgeLocalIndex	AbstractSrnModel	protected
mFinishedRunningOdes	CellCycleModelOdeHandler	protected
mInitialConditions	AbstractOdeSrnModel	protected
mIsEdgeBasedModel	AbstractSrnModel	protected
mLastTime	CellCycleModelOdeHandler	protected
mpCell	AbstractSrnModel	protected
mpOdeSolver	CellCycleModelOdeHandler	protected
mpOdeSystem	CellCycleModelOdeHandler	protected
mSimulatedToTime	AbstractSrnModel	protected
mStateSize	AbstractOdeSrnModel	protected
AbstractSrnModel::operator=(const AbstractSrnModel &)	AbstractSrnModel	private
OutputSrnModelInfo(out_stream &rParamsFile)	AbstractSrnModel
OutputSrnModelParameters(out_stream &rParamsFile)	AbstractOdeSrnModel	virtual
ResetForDivision()	AbstractOdeSrnModel	virtual
ScaleSrnVariables(const double theta)	AbstractOdeSrnModel	virtual
serialize(Archive &archive, const unsigned int version)	AbstractOdeSrnModel	inlineprivate
SetCell(CellPtr pCell)	AbstractSrnModel	virtual
SetDt(double timeStep)	CellCycleModelOdeHandler
SetEdgeLocalIndex(unsigned index)	AbstractSrnModel
SetEdgeModelIndicator(const bool isEdgeModel)	AbstractSrnModel
SetInitialConditions(std::vector< double > initialConditions)	AbstractOdeSrnModel
SetLastTime(double lastTime)	CellCycleModelOdeHandler
SetOdeSystem(AbstractOdeSystem *pOdeSystem)	CellCycleModelOdeHandler
SetProteinConcentrationsForTestsOnly(double lastTime, std::vector< double > proteinConcentrations)	CellCycleModelOdeHandler
SetSimulatedToTime(double simulatedToTime)	AbstractSrnModel
SetStateVariables(const std::vector< double > &rStateVariables)	CellCycleModelOdeHandler
SimulateToCurrentTime()	AbstractOdeSrnModel	virtual
SolveOdeToTime(double currentTime)	CellCycleModelOdeHandler	protected
SplitEdgeSrn(const double relativePosition)	AbstractSrnModel	virtual
TidyTemplatedExportIdentifier(std::string identifier) const	Identifiable	private
~AbstractOdeSrnModel()	AbstractOdeSrnModel	virtual
~AbstractSrnModel()	AbstractSrnModel	virtual
~CellCycleModelOdeHandler()	CellCycleModelOdeHandler	virtual
~Identifiable()	Identifiable	virtual