Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
AbstractOnLatticeCellPopulation< DIM > Member List

This is the complete list of members for AbstractOnLatticeCellPopulation< DIM >, including all inherited members.

AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)AbstractCellPopulation< DIM >protected
AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCellPopulation< DIM >
AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh)AbstractOnLatticeCellPopulation< DIM >protected
AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false)AbstractOnLatticeCellPopulation< DIM >
AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter, CellPtr pCell)=0AbstractCellPopulation< DIM >pure virtual
AcceptCellWritersAcrossPopulation()AbstractCellPopulation< DIM >protectedvirtual
AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationCountWriter)=0AbstractCellPopulation< DIM >pure virtual
AcceptPopulationEventWriter(boost::shared_ptr< AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationEventWriter)=0AbstractCellPopulation< DIM >pure virtual
AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)=0AbstractCellPopulation< DIM >pure virtual
AddCell(CellPtr pNewCell, CellPtr pParentCell=CellPtr())=0AbstractCellPopulation< DIM >pure virtual
AddCellPopulationCountWriter()AbstractCellPopulation< DIM >inline
AddCellPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationCountWriter)AbstractCellPopulation< DIM >inline
AddCellPopulationEventWriter()AbstractCellPopulation< DIM >inline
AddCellPopulationEventWriter(boost::shared_ptr< AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationEventWriter)AbstractCellPopulation< DIM >inline
AddCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< DIM >virtual
AddCellWriter()AbstractCellPopulation< DIM >inline
AddCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter)AbstractCellPopulation< DIM >inline
AddDivisionInformation(std::string divisionInformation)AbstractCellPopulation< DIM >
AddPopulationWriter()AbstractCellPopulation< DIM >inline
AddPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)AbstractCellPopulation< DIM >inline
AddRemovalInformation(std::string removalInformation)AbstractCellPopulation< DIM >
AddUpdateRule(boost::shared_ptr< AbstractUpdateRule< DIM > > pUpdateRule)=0AbstractOnLatticeCellPopulation< DIM >pure virtual
Begin()AbstractCellPopulation< DIM >
boost::serialization::accessAbstractOnLatticeCellPopulation< DIM >friend
ClearDivisionsInformation()AbstractCellPopulation< DIM >
ClearRemovalsInformation()AbstractCellPopulation< DIM >
CloseRoundRobinWritersFiles()AbstractCellPopulation< DIM >private
CloseWritersFiles()AbstractCellPopulation< DIM >virtual
CreateOrderedPair(unsigned index1, unsigned index2)AbstractCellPopulation< DIM >
End()AbstractCellPopulation< DIM >
GenerateRemovalInformation(CellPtr pCell, std::string killerInfo)AbstractCellPopulation< DIM >
GetCellAncestors()AbstractCellPopulation< DIM >
GetCellCyclePhaseCount()AbstractCellPopulation< DIM >
GetCellDataItemAtPdeNode(unsigned pdeNodeIndex, std::string &rVariableName, bool dirichletBoundaryConditionApplies=false, double dirichletBoundaryValue=0.0)=0AbstractCellPopulation< DIM >pure virtual
GetCellMutationStateCount()AbstractCellPopulation< DIM >
GetCellProliferativeTypeCount()AbstractCellPopulation< DIM >
GetCellPropertyRegistry()AbstractCellPopulation< DIM >
GetCellsUsingLocationIndex(unsigned index)AbstractCellPopulation< DIM >
GetCellUsingLocationIndex(unsigned index)AbstractCellPopulation< DIM >virtual
GetCentroidOfCellPopulation()AbstractCellPopulation< DIM >
GetDefaultTimeStep()AbstractOnLatticeCellPopulation< DIM >virtual
GetDivisionsInformation()AbstractCellPopulation< DIM >
GetIdentifier() constIdentifiable
GetIterateRandomlyOverUpdateRuleCollection()AbstractOnLatticeCellPopulation< DIM >
GetLocationIndexUsingCell(CellPtr pCell)AbstractCellPopulation< DIM >
GetLocationOfCellCentre(CellPtr pCell)=0AbstractCellPopulation< DIM >pure virtual
GetNeighbouringEdgeIndices(CellPtr pCell, unsigned pEdgeIndex)AbstractCellPopulation< DIM >virtual
GetNeighbouringLocationIndices(CellPtr pCell)=0AbstractCellPopulation< DIM >pure virtual
GetNeighbouringNodeIndices(unsigned index)AbstractOnLatticeCellPopulation< DIM >virtual
GetNode(unsigned index)=0AbstractCellPopulation< DIM >pure virtual
GetNumAllCells()AbstractCellPopulation< DIM >
GetNumNodes()=0AbstractCellPopulation< DIM >pure virtual
GetNumRealCells()AbstractCellPopulation< DIM >
GetOutputResultsForChasteVisualizer()AbstractCellPopulation< DIM >
GetRemovalsInformation()AbstractCellPopulation< DIM >
GetSizeOfCellPopulation()AbstractCellPopulation< DIM >
GetTetrahedralMeshForPdeModifier()=0AbstractCellPopulation< DIM >pure virtual
GetUpdateNodesInRandomOrder()AbstractOnLatticeCellPopulation< DIM >
GetUpdateRuleCollection() constAbstractOnLatticeCellPopulation< DIM >virtual
GetVolumeOfCell(CellPtr pCell)=0AbstractCellPopulation< DIM >pure virtual
GetWidth(const unsigned &rDimension)=0AbstractCellPopulation< DIM >pure virtual
HasWriter() constAbstractCellPopulation< DIM >inline
InitialiseCells()AbstractCellPopulation< DIM >
IsCellAssociatedWithADeletedLocation(CellPtr pCell)=0AbstractCellPopulation< DIM >pure virtual
IsCellAttachedToLocationIndex(unsigned index)AbstractCellPopulation< DIM >virtual
IsPdeNodeAssociatedWithNonApoptoticCell(unsigned pdeNodeIndex)AbstractCellPopulation< DIM >virtual
IsRoomToDivide(CellPtr pCell)AbstractCellPopulation< DIM >virtual
KillCell(CellPtr pCell, std::string killerInfo)AbstractCellPopulation< DIM >
mCellLocationMapAbstractCellPopulation< DIM >protected
mCellPopulationCountWritersAbstractCellPopulation< DIM >protected
mCellPopulationEventWritersAbstractCellPopulation< DIM >protected
mCellPopulationWritersAbstractCellPopulation< DIM >protected
mCellsAbstractCellPopulation< DIM >protected
mCellWritersAbstractCellPopulation< DIM >protected
mCentroidAbstractCellPopulation< DIM >protected
mDeleteMeshAbstractOnLatticeCellPopulation< DIM >protected
mDivisionsInformationAbstractCellPopulation< DIM >protected
mIterateRandomlyOverUpdateRuleCollectionAbstractOnLatticeCellPopulation< DIM >protected
mLocationCellMapAbstractCellPopulation< DIM >protected
mOutputResultsForChasteVisualizerAbstractCellPopulation< DIM >protected
MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index)AbstractCellPopulation< DIM >
mpCellPropertyRegistryAbstractCellPopulation< DIM >protected
mpVtkMetaFileAbstractCellPopulation< DIM >protected
mRemovalsInformationAbstractCellPopulation< DIM >protected
mrMeshAbstractCellPopulation< DIM >protected
mUpdateNodesInRandomOrderAbstractOnLatticeCellPopulation< DIM >protected
mUpdateRuleCollectionAbstractOnLatticeCellPopulation< DIM >protected
OpenRoundRobinWritersFilesForAppend(OutputFileHandler &rOutputFileHandler)AbstractCellPopulation< DIM >private
OpenWritersFiles(OutputFileHandler &rOutputFileHandler)AbstractCellPopulation< DIM >virtual
OutputCellPopulationInfo(out_stream &rParamsFile)AbstractCellPopulation< DIM >
OutputCellPopulationParameters(out_stream &rParamsFile)AbstractOnLatticeCellPopulation< DIM >virtual
RemoveAllUpdateRules()AbstractOnLatticeCellPopulation< DIM >virtual
RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< DIM >virtual
RemoveDeadCells()=0AbstractCellPopulation< DIM >pure virtual
rGetCells()AbstractCellPopulation< DIM >
rGetMesh()AbstractCellPopulation< DIM >
serialize(Archive &archive, const unsigned int version)AbstractOnLatticeCellPopulation< DIM >inlineprivate
SetCellAncestorsToLocationIndices()AbstractCellPopulation< DIM >
SetCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< DIM >
SetDataOnAllCells(const std::string &rDataName, double dataValue)AbstractCellPopulation< DIM >
SetDefaultCellMutationStateAndProliferativeTypeOrdering()AbstractCellPopulation< DIM >
SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly)AbstractOnLatticeCellPopulation< DIM >
SetNode(unsigned index, ChastePoint< DIM > &rNewLocation)AbstractOnLatticeCellPopulation< DIM >
AbstractCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > &rNewLocation)=0AbstractCellPopulation< DIM >pure virtual
SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer)AbstractCellPopulation< DIM >
SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder)AbstractOnLatticeCellPopulation< DIM >
SimulationSetupHook(AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > *pSimulation)AbstractCellPopulation< DIM >virtual
StartApoptosisOnCell(CellPtr pCell, std::string killerInfo)AbstractCellPopulation< DIM >
TidyTemplatedExportIdentifier(std::string identifier) constIdentifiableprivate
Update(bool hasHadBirthsOrDeaths=true)=0AbstractCellPopulation< DIM >pure virtual
UpdateCellLocations(double dt)=0AbstractOnLatticeCellPopulation< DIM >pure virtual
UpdateCellProcessLocation()AbstractCellPopulation< DIM >virtual
Validate()=0AbstractCellPopulation< DIM >protectedpure virtual
WriteDataToVisualizerSetupFile(out_stream &pVizSetupFile)AbstractCellPopulation< DIM >virtual
WriteResultsToFiles(const std::string &rDirectory)AbstractCellPopulation< DIM >virtual
WriteVtkResultsToFile(const std::string &rDirectory)=0AbstractCellPopulation< DIM >protectedpure virtual
~AbstractCellPopulation()AbstractCellPopulation< DIM >virtual
~AbstractOnLatticeCellPopulation()AbstractOnLatticeCellPopulation< DIM >virtual
~Identifiable()Identifiablevirtual