AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh) | AbstractCellPopulation< DIM > | protected |
AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< DIM > | |
AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh) | AbstractOnLatticeCellPopulation< DIM > | protected |
AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false) | AbstractOnLatticeCellPopulation< DIM > | |
AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter, CellPtr pCell)=0 | AbstractCellPopulation< DIM > | pure virtual |
AcceptCellWritersAcrossPopulation() | AbstractCellPopulation< DIM > | protectedvirtual |
AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationCountWriter)=0 | AbstractCellPopulation< DIM > | pure virtual |
AcceptPopulationEventWriter(boost::shared_ptr< AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationEventWriter)=0 | AbstractCellPopulation< DIM > | pure virtual |
AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)=0 | AbstractCellPopulation< DIM > | pure virtual |
AddCell(CellPtr pNewCell, CellPtr pParentCell=CellPtr())=0 | AbstractCellPopulation< DIM > | pure virtual |
AddCellPopulationCountWriter() | AbstractCellPopulation< DIM > | inline |
AddCellPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationCountWriter) | AbstractCellPopulation< DIM > | inline |
AddCellPopulationEventWriter() | AbstractCellPopulation< DIM > | inline |
AddCellPopulationEventWriter(boost::shared_ptr< AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationEventWriter) | AbstractCellPopulation< DIM > | inline |
AddCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< DIM > | virtual |
AddCellWriter() | AbstractCellPopulation< DIM > | inline |
AddCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter) | AbstractCellPopulation< DIM > | inline |
AddDivisionInformation(std::string divisionInformation) | AbstractCellPopulation< DIM > | |
AddPopulationWriter() | AbstractCellPopulation< DIM > | inline |
AddPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter) | AbstractCellPopulation< DIM > | inline |
AddRemovalInformation(std::string removalInformation) | AbstractCellPopulation< DIM > | |
AddUpdateRule(boost::shared_ptr< AbstractUpdateRule< DIM > > pUpdateRule)=0 | AbstractOnLatticeCellPopulation< DIM > | pure virtual |
Begin() | AbstractCellPopulation< DIM > | |
boost::serialization::access | AbstractOnLatticeCellPopulation< DIM > | friend |
ClearDivisionsInformation() | AbstractCellPopulation< DIM > | |
ClearRemovalsInformation() | AbstractCellPopulation< DIM > | |
CloseRoundRobinWritersFiles() | AbstractCellPopulation< DIM > | private |
CloseWritersFiles() | AbstractCellPopulation< DIM > | virtual |
CreateOrderedPair(unsigned index1, unsigned index2) | AbstractCellPopulation< DIM > | |
End() | AbstractCellPopulation< DIM > | |
GenerateRemovalInformation(CellPtr pCell, std::string killerInfo) | AbstractCellPopulation< DIM > | |
GetCellAncestors() | AbstractCellPopulation< DIM > | |
GetCellCyclePhaseCount() | AbstractCellPopulation< DIM > | |
GetCellDataItemAtPdeNode(unsigned pdeNodeIndex, std::string &rVariableName, bool dirichletBoundaryConditionApplies=false, double dirichletBoundaryValue=0.0)=0 | AbstractCellPopulation< DIM > | pure virtual |
GetCellMutationStateCount() | AbstractCellPopulation< DIM > | |
GetCellProliferativeTypeCount() | AbstractCellPopulation< DIM > | |
GetCellPropertyRegistry() | AbstractCellPopulation< DIM > | |
GetCellsUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | |
GetCellUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | virtual |
GetCentroidOfCellPopulation() | AbstractCellPopulation< DIM > | |
GetDefaultTimeStep() | AbstractOnLatticeCellPopulation< DIM > | virtual |
GetDivisionsInformation() | AbstractCellPopulation< DIM > | |
GetIdentifier() const | Identifiable | |
GetIterateRandomlyOverUpdateRuleCollection() | AbstractOnLatticeCellPopulation< DIM > | |
GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< DIM > | |
GetLocationOfCellCentre(CellPtr pCell)=0 | AbstractCellPopulation< DIM > | pure virtual |
GetNeighbouringEdgeIndices(CellPtr pCell, unsigned pEdgeIndex) | AbstractCellPopulation< DIM > | virtual |
GetNeighbouringLocationIndices(CellPtr pCell)=0 | AbstractCellPopulation< DIM > | pure virtual |
GetNeighbouringNodeIndices(unsigned index) | AbstractOnLatticeCellPopulation< DIM > | virtual |
GetNode(unsigned index)=0 | AbstractCellPopulation< DIM > | pure virtual |
GetNumAllCells() | AbstractCellPopulation< DIM > | |
GetNumNodes()=0 | AbstractCellPopulation< DIM > | pure virtual |
GetNumRealCells() | AbstractCellPopulation< DIM > | |
GetOutputResultsForChasteVisualizer() | AbstractCellPopulation< DIM > | |
GetRemovalsInformation() | AbstractCellPopulation< DIM > | |
GetSizeOfCellPopulation() | AbstractCellPopulation< DIM > | |
GetTetrahedralMeshForPdeModifier()=0 | AbstractCellPopulation< DIM > | pure virtual |
GetUpdateNodesInRandomOrder() | AbstractOnLatticeCellPopulation< DIM > | |
GetUpdateRuleCollection() const | AbstractOnLatticeCellPopulation< DIM > | virtual |
GetVolumeOfCell(CellPtr pCell)=0 | AbstractCellPopulation< DIM > | pure virtual |
GetWidth(const unsigned &rDimension)=0 | AbstractCellPopulation< DIM > | pure virtual |
HasWriter() const | AbstractCellPopulation< DIM > | inline |
InitialiseCells() | AbstractCellPopulation< DIM > | |
IsCellAssociatedWithADeletedLocation(CellPtr pCell)=0 | AbstractCellPopulation< DIM > | pure virtual |
IsCellAttachedToLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | virtual |
IsPdeNodeAssociatedWithNonApoptoticCell(unsigned pdeNodeIndex) | AbstractCellPopulation< DIM > | virtual |
IsRoomToDivide(CellPtr pCell) | AbstractCellPopulation< DIM > | virtual |
KillCell(CellPtr pCell, std::string killerInfo) | AbstractCellPopulation< DIM > | |
mCellLocationMap | AbstractCellPopulation< DIM > | protected |
mCellPopulationCountWriters | AbstractCellPopulation< DIM > | protected |
mCellPopulationEventWriters | AbstractCellPopulation< DIM > | protected |
mCellPopulationWriters | AbstractCellPopulation< DIM > | protected |
mCells | AbstractCellPopulation< DIM > | protected |
mCellWriters | AbstractCellPopulation< DIM > | protected |
mCentroid | AbstractCellPopulation< DIM > | protected |
mDeleteMesh | AbstractOnLatticeCellPopulation< DIM > | protected |
mDivisionsInformation | AbstractCellPopulation< DIM > | protected |
mIterateRandomlyOverUpdateRuleCollection | AbstractOnLatticeCellPopulation< DIM > | protected |
mLocationCellMap | AbstractCellPopulation< DIM > | protected |
mOutputResultsForChasteVisualizer | AbstractCellPopulation< DIM > | protected |
MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index) | AbstractCellPopulation< DIM > | |
mpCellPropertyRegistry | AbstractCellPopulation< DIM > | protected |
mpVtkMetaFile | AbstractCellPopulation< DIM > | protected |
mRemovalsInformation | AbstractCellPopulation< DIM > | protected |
mrMesh | AbstractCellPopulation< DIM > | protected |
mUpdateNodesInRandomOrder | AbstractOnLatticeCellPopulation< DIM > | protected |
mUpdateRuleCollection | AbstractOnLatticeCellPopulation< DIM > | protected |
OpenRoundRobinWritersFilesForAppend(OutputFileHandler &rOutputFileHandler) | AbstractCellPopulation< DIM > | private |
OpenWritersFiles(OutputFileHandler &rOutputFileHandler) | AbstractCellPopulation< DIM > | virtual |
OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< DIM > | |
OutputCellPopulationParameters(out_stream &rParamsFile) | AbstractOnLatticeCellPopulation< DIM > | virtual |
RemoveAllUpdateRules() | AbstractOnLatticeCellPopulation< DIM > | virtual |
RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< DIM > | virtual |
RemoveDeadCells()=0 | AbstractCellPopulation< DIM > | pure virtual |
rGetCells() | AbstractCellPopulation< DIM > | |
rGetMesh() | AbstractCellPopulation< DIM > | |
serialize(Archive &archive, const unsigned int version) | AbstractOnLatticeCellPopulation< DIM > | inlineprivate |
SetCellAncestorsToLocationIndices() | AbstractCellPopulation< DIM > | |
SetCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< DIM > | |
SetDataOnAllCells(const std::string &rDataName, double dataValue) | AbstractCellPopulation< DIM > | |
SetDefaultCellMutationStateAndProliferativeTypeOrdering() | AbstractCellPopulation< DIM > | |
SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly) | AbstractOnLatticeCellPopulation< DIM > | |
SetNode(unsigned index, ChastePoint< DIM > &rNewLocation) | AbstractOnLatticeCellPopulation< DIM > | |
AbstractCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > &rNewLocation)=0 | AbstractCellPopulation< DIM > | pure virtual |
SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer) | AbstractCellPopulation< DIM > | |
SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder) | AbstractOnLatticeCellPopulation< DIM > | |
SimulationSetupHook(AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > *pSimulation) | AbstractCellPopulation< DIM > | virtual |
StartApoptosisOnCell(CellPtr pCell, std::string killerInfo) | AbstractCellPopulation< DIM > | |
TidyTemplatedExportIdentifier(std::string identifier) const | Identifiable | private |
Update(bool hasHadBirthsOrDeaths=true)=0 | AbstractCellPopulation< DIM > | pure virtual |
UpdateCellLocations(double dt)=0 | AbstractOnLatticeCellPopulation< DIM > | pure virtual |
UpdateCellProcessLocation() | AbstractCellPopulation< DIM > | virtual |
Validate()=0 | AbstractCellPopulation< DIM > | protectedpure virtual |
WriteDataToVisualizerSetupFile(out_stream &pVizSetupFile) | AbstractCellPopulation< DIM > | virtual |
WriteResultsToFiles(const std::string &rDirectory) | AbstractCellPopulation< DIM > | virtual |
WriteVtkResultsToFile(const std::string &rDirectory)=0 | AbstractCellPopulation< DIM > | protectedpure virtual |
~AbstractCellPopulation() | AbstractCellPopulation< DIM > | virtual |
~AbstractOnLatticeCellPopulation() | AbstractOnLatticeCellPopulation< DIM > | virtual |
~Identifiable() | Identifiable | virtual |