AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
Alarcon2004OxygenBasedCellCycleOdeSystem(double oxygenConcentration, bool isLabelled, std::vector< double > stateVariables=std::vector< double >()) | Alarcon2004OxygenBasedCellCycleOdeSystem | |
boost::serialization::access (defined in Alarcon2004OxygenBasedCellCycleOdeSystem) | Alarcon2004OxygenBasedCellCycleOdeSystem | friend |
CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
CalculateStoppingEvent(double time, const std::vector< double > &rY) | Alarcon2004OxygenBasedCellCycleOdeSystem | virtual |
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | protected |
ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | virtual |
ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | protected |
DumpState(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | protected |
DumpState(const std::string &rMessage, std::vector< double > Y, double time) | AbstractParameterisedSystem< std::vector< double > > | protected |
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | Alarcon2004OxygenBasedCellCycleOdeSystem | virtual |
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfParameters() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfStateVariables() const | AbstractUntemplatedParameterisedSystem | |
GetOxygenConcentration() const | Alarcon2004OxygenBasedCellCycleOdeSystem | |
GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetStateMessage(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | private |
GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
GetUseAnalyticJacobian() | AbstractOdeSystem | |
HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
Init() | Alarcon2004OxygenBasedCellCycleOdeSystem | |
IsLabelled() const | Alarcon2004OxygenBasedCellCycleOdeSystem | |
load(Archive &archive, const unsigned int version) | AbstractOdeSystem | inlineprivate |
ma1 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
ma2 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
ma3 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
ma4 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mB | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mb3 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mb4 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mc1 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mc2 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
md1 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
md2 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mEta | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mIsLabelled | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mJ3 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mJ4 | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mMstar | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | protected |
mOxygenConcentration | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
mParameters | AbstractParameterisedSystem< std::vector< double > > | protected |
mpSystemInfo | AbstractUntemplatedParameterisedSystem | protected |
mStateVariables | AbstractParameterisedSystem< std::vector< double > > | protected |
mUseAnalyticJacobian | AbstractOdeSystem | protected |
mxThreshold | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
myThreshold | Alarcon2004OxygenBasedCellCycleOdeSystem | private |
ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | virtual |
rGetConstStateVariables() const | AbstractOdeSystem | |
rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetStateVariableNames() const | AbstractUntemplatedParameterisedSystem | |
rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
save(Archive &archive, const unsigned int version) const | AbstractOdeSystem | inlineprivate |
serialize(Archive &archive, const unsigned int version) | Alarcon2004OxygenBasedCellCycleOdeSystem | inlineprivate |
SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
SetIsLabelled(bool isLabelled) | Alarcon2004OxygenBasedCellCycleOdeSystem | |
SetParameter(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetStateVariable(unsigned index, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
SetStateVariable(const std::string &rName, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
SetStateVariables(const std::vector< double > &rStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
VerifyStateVariables() | AbstractParameterisedSystem< std::vector< double > > | inlinevirtual |
~AbstractOdeSystem() | AbstractOdeSystem | virtual |
~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | virtual |
~Alarcon2004OxygenBasedCellCycleOdeSystem() | Alarcon2004OxygenBasedCellCycleOdeSystem | |