Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
Alarcon2004OxygenBasedCellCycleOdeSystem Member List

This is the complete list of members for Alarcon2004OxygenBasedCellCycleOdeSystem, including all inherited members.

AbstractOdeSystem(unsigned numberOfStateVariables)AbstractOdeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< std::vector< double > >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
Alarcon2004OxygenBasedCellCycleOdeSystem(double oxygenConcentration, bool isLabelled, std::vector< double > stateVariables=std::vector< double >())Alarcon2004OxygenBasedCellCycleOdeSystem
boost::serialization::access (defined in Alarcon2004OxygenBasedCellCycleOdeSystem)Alarcon2004OxygenBasedCellCycleOdeSystemfriend
CalculateRootFunction(double time, const std::vector< double > &rY)AbstractOdeSystemvirtual
CalculateStoppingEvent(double time, const std::vector< double > &rY)Alarcon2004OxygenBasedCellCycleOdeSystemvirtual
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)AbstractParameterisedSystem< std::vector< double > >protected
ComputeDerivedQuantities(double time, const std::vector< double > &rState)AbstractParameterisedSystem< std::vector< double > >virtual
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< std::vector< double > >
DumpState(const std::string &rMessage)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double > Y)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double > Y, double time)AbstractParameterisedSystem< std::vector< double > >protected
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)Alarcon2004OxygenBasedCellCycleOdeSystemvirtual
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetDerivedQuantityIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetInitialConditions() constAbstractParameterisedSystem< std::vector< double > >
GetNumberOfAttributes() constAbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() constAbstractUntemplatedParameterisedSystem
GetNumberOfParameters() constAbstractUntemplatedParameterisedSystem
GetNumberOfStateVariables() constAbstractUntemplatedParameterisedSystem
GetOxygenConcentration() constAlarcon2004OxygenBasedCellCycleOdeSystem
GetParameter(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetParameter(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetParameterIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetStateMessage(const std::string &rMessage, std::vector< double > Y)AbstractParameterisedSystem< std::vector< double > >private
GetStateVariable(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariableIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< std::vector< double > >
GetStateVariableUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetSystemInformation() constAbstractUntemplatedParameterisedSystem
GetSystemName() constAbstractUntemplatedParameterisedSystem
GetUseAnalyticJacobian()AbstractOdeSystem
HasAnyVariable(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasDerivedQuantity(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) constAbstractUntemplatedParameterisedSystem
Init()Alarcon2004OxygenBasedCellCycleOdeSystem
IsLabelled() constAlarcon2004OxygenBasedCellCycleOdeSystem
load(Archive &archive, const unsigned int version)AbstractOdeSysteminlineprivate
ma1Alarcon2004OxygenBasedCellCycleOdeSystemprivate
ma2Alarcon2004OxygenBasedCellCycleOdeSystemprivate
ma3Alarcon2004OxygenBasedCellCycleOdeSystemprivate
ma4Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mBAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mb3Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mb4Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mc1Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mc2Alarcon2004OxygenBasedCellCycleOdeSystemprivate
md1Alarcon2004OxygenBasedCellCycleOdeSystemprivate
md2Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mEtaAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mIsLabelledAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mJ3Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mJ4Alarcon2004OxygenBasedCellCycleOdeSystemprivate
mMstarAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystemprotected
mOxygenConcentrationAlarcon2004OxygenBasedCellCycleOdeSystemprivate
mParametersAbstractParameterisedSystem< std::vector< double > >protected
mpSystemInfoAbstractUntemplatedParameterisedSystemprotected
mStateVariablesAbstractParameterisedSystem< std::vector< double > >protected
mUseAnalyticJacobianAbstractOdeSystemprotected
mxThresholdAlarcon2004OxygenBasedCellCycleOdeSystemprivate
myThresholdAlarcon2004OxygenBasedCellCycleOdeSystemprivate
ResetToInitialConditions()AbstractParameterisedSystem< std::vector< double > >virtual
rGetConstStateVariables() constAbstractOdeSystem
rGetDerivedQuantityNames() constAbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() constAbstractUntemplatedParameterisedSystem
rGetParameterNames() constAbstractUntemplatedParameterisedSystem
rGetParameterUnits() constAbstractUntemplatedParameterisedSystem
rGetStateVariableNames() constAbstractUntemplatedParameterisedSystem
rGetStateVariables()AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableUnits() constAbstractUntemplatedParameterisedSystem
save(Archive &archive, const unsigned int version) constAbstractOdeSysteminlineprivate
serialize(Archive &archive, const unsigned int version)Alarcon2004OxygenBasedCellCycleOdeSysteminlineprivate
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions)AbstractParameterisedSystem< std::vector< double > >
SetIsLabelled(bool isLabelled)Alarcon2004OxygenBasedCellCycleOdeSystem
SetParameter(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetParameter(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(unsigned index, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(const std::string &rName, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariables(const std::vector< double > &rStateVariables)AbstractParameterisedSystem< std::vector< double > >
VerifyStateVariables()AbstractParameterisedSystem< std::vector< double > >inlinevirtual
~AbstractOdeSystem()AbstractOdeSystemvirtual
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystemvirtual
~Alarcon2004OxygenBasedCellCycleOdeSystem()Alarcon2004OxygenBasedCellCycleOdeSystem