Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
BidomainProblem< DIM > Member List

This is the complete list of members for BidomainProblem< DIM >, including all inherited members.

AbstractCardiacProblem(AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory)AbstractCardiacProblem< DIM, DIM, 2 >
AbstractCardiacProblem()AbstractCardiacProblem< DIM, DIM, 2 >
AddOutputModifier(boost::shared_ptr< AbstractOutputModifier > pOutputModifier)AbstractCardiacProblem< DIM, DIM, 2 >inline
AnalyseMeshForBath()BidomainProblem< DIM >protected
AtBeginningOfTimestep(double time)BidomainProblem< DIM >virtual
BccType typedefAbstractCardiacProblem< DIM, DIM, 2 >private
BidomainProblem(AbstractCardiacCellFactory< DIM > *pCellFactory, bool hasBath=false)BidomainProblem< DIM >
BidomainProblem()BidomainProblem< DIM >
boost::serialization::accessBidomainProblem< DIM >friend
CloseFilesAndPostProcess()AbstractCardiacProblem< DIM, DIM, 2 >
CreateCardiacTissue()BidomainProblem< DIM >protectedvirtual
CreateInitialCondition()BidomainProblem< DIM >protectedvirtual
CreateMeshFromHeartConfig()AbstractCardiacProblem< DIM, DIM, 2 >protectedvirtual
CreateSolver()BidomainProblem< DIM >protectedvirtual
DefineExtraVariablesWriterColumns(bool extending)AbstractCardiacProblem< DIM, DIM, 2 >
DefineWriterColumns(bool extending)BidomainProblem< DIM >virtual
GetBidomainTissue()BidomainProblem< DIM >
GetCurrentTime()AbstractCardiacProblem< DIM, DIM, 2 >
GetDataReader()AbstractCardiacProblem< DIM, DIM, 2 >
GetHasBath()BidomainProblem< DIM >virtual
GetSolution()AbstractCardiacProblem< DIM, DIM, 2 >
GetSolutionDistributedVector()AbstractCardiacProblem< DIM, DIM, 2 >
GetTissue()AbstractCardiacProblem< DIM, DIM, 2 >
Initialise()AbstractCardiacProblem< DIM, DIM, 2 >
InitialiseWriter()AbstractCardiacProblem< DIM, DIM, 2 >
load(Archive &archive, const unsigned int version)BidomainProblem< DIM >inlineprivate
LoadBoundaryConditions(Archive &archive, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)AbstractCardiacProblem< DIM, DIM, 2 >inlineprivate
LoadExtraArchive(Archive &archive, unsigned version)AbstractCardiacProblem< DIM, DIM, 2 >
LoadExtraArchiveForBidomain(Archive &archive, unsigned version)BidomainProblem< DIM >
mAllocatedMemoryForMeshAbstractCardiacProblem< DIM, DIM, 2 >protected
mCurrentTimeAbstractCardiacProblem< DIM, DIM, 2 >protected
mExtracelluarColumnIdBidomainProblem< DIM >protected
mExtraVariablesIdAbstractCardiacProblem< DIM, DIM, 2 >protected
mFixedExtracellularPotentialNodesBidomainProblem< DIM >protected
mHasBathBidomainProblem< DIM >protected
mHdf5DataWriterChunkSizeAndAlignmentAbstractCardiacProblem< DIM, DIM, 2 >protected
mMeshFilenameAbstractCardiacProblem< DIM, DIM, 2 >protected
mNodeColumnIdAbstractCardiacProblem< DIM, DIM, 2 >protected
mNodesToOutputAbstractCardiacProblem< DIM, DIM, 2 >protected
mOutputModifiersAbstractCardiacProblem< DIM, DIM, 2 >protected
mpBidomainTissueBidomainProblem< DIM >protected
mpBoundaryConditionsContainerAbstractCardiacProblem< DIM, DIM, 2 >protected
mpCardiacTissueAbstractCardiacProblem< DIM, DIM, 2 >protected
mpCellFactoryAbstractCardiacProblem< DIM, DIM, 2 >protected
mpDefaultBoundaryConditionsContainerAbstractCardiacProblem< DIM, DIM, 2 >protected
mpElectrodesBidomainProblem< DIM >protected
mpMeshAbstractCardiacProblem< DIM, DIM, 2 >protected
mPrintOutputAbstractCardiacProblem< DIM, DIM, 2 >protected
mpSolverBidomainProblem< DIM >protected
mpTimeAdaptivityControllerAbstractCardiacProblem< DIM, DIM, 2 >protected
mpWriterAbstractCardiacProblem< DIM, DIM, 2 >protected
mRowForAverageOfPhiZeroedBidomainProblem< DIM >protected
mSolutionAbstractCardiacProblem< DIM, DIM, 2 >protected
mTimeColumnIdAbstractCardiacProblem< DIM, DIM, 2 >protected
mUseHdf5DataWriterCacheAbstractCardiacProblem< DIM, DIM, 2 >protected
mVoltageColumnIdAbstractCardiacProblem< DIM, DIM, 2 >protected
mWriteInfoAbstractCardiacProblem< DIM, DIM, 2 >protected
OnEndOfTimestep(double time)BidomainProblem< DIM >virtual
PreSolveChecks()BidomainProblem< DIM >virtual
PrintOutput(bool rPrintOutput)AbstractCardiacProblem< DIM, DIM, 2 >
rGetMesh()AbstractCardiacProblem< DIM, DIM, 2 >
save(Archive &archive, const unsigned int version) constBidomainProblem< DIM >inlineprivate
SaveBoundaryConditions(Archive &archive, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BccType pBcc) constAbstractCardiacProblem< DIM, DIM, 2 >inlineprivate
SetBoundaryConditionsContainer(BccType pBcc)AbstractCardiacProblem< DIM, DIM, 2 >
SetElectrodes()BidomainProblem< DIM >virtual
SetFixedExtracellularPotentialNodes(std::vector< unsigned > nodes)BidomainProblem< DIM >
SetHdf5DataWriterTargetChunkSizeAndAlignment(hsize_t size)AbstractCardiacProblem< DIM, DIM, 2 >
SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)AbstractCardiacProblem< DIM, DIM, 2 >
SetNodeForAverageOfPhiZeroed(unsigned node)BidomainProblem< DIM >
SetNodesPerProcessorFilename(const std::string &rFilename)AbstractCardiacProblem< DIM, DIM, 2 >
SetOutputNodes(std::vector< unsigned > &rNodesToOutput)AbstractCardiacProblem< DIM, DIM, 2 >
SetUpAdditionalStoppingTimes(std::vector< double > &rAdditionalStoppingTimes)BidomainProblem< DIM >virtual
SetUseHdf5DataWriterCache(bool useCache=true)AbstractCardiacProblem< DIM, DIM, 2 >
SetUseTimeAdaptivityController(bool useAdaptivity, AbstractTimeAdaptivityController *pController=NULL)AbstractCardiacProblem< DIM, DIM, 2 >
SetWriteInfo(bool writeInfo=true)AbstractCardiacProblem< DIM, DIM, 2 >
Solve()AbstractCardiacProblem< DIM, DIM, 2 >
TestBidomainWithBathProblem (defined in BidomainProblem< DIM >)BidomainProblem< DIM >friend
TestCardiacSimulationArchiver (defined in BidomainProblem< DIM >)BidomainProblem< DIM >friend
TestPCTwoLevelsBlockDiagonal (defined in BidomainProblem< DIM >)BidomainProblem< DIM >friend
WriteExtraVariablesOneStep()AbstractCardiacProblem< DIM, DIM, 2 >
WriteInfo(double time)BidomainProblem< DIM >virtual
WriteOneStep(double time, Vec voltageVec)BidomainProblem< DIM >virtual
~AbstractCardiacProblem()AbstractCardiacProblem< DIM, DIM, 2 >virtual
~AbstractUntemplatedCardiacProblem()AbstractUntemplatedCardiacProbleminlinevirtual