AbstractCardiacProblem(AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory) | AbstractCardiacProblem< DIM, DIM, 2 > | |
AbstractCardiacProblem() | AbstractCardiacProblem< DIM, DIM, 2 > | |
AddOutputModifier(boost::shared_ptr< AbstractOutputModifier > pOutputModifier) | AbstractCardiacProblem< DIM, DIM, 2 > | inline |
AnalyseMeshForBath() | BidomainProblem< DIM > | protected |
AtBeginningOfTimestep(double time) | BidomainProblem< DIM > | virtual |
BccType typedef | AbstractCardiacProblem< DIM, DIM, 2 > | private |
BidomainProblem(AbstractCardiacCellFactory< DIM > *pCellFactory, bool hasBath=false) | BidomainProblem< DIM > | |
BidomainProblem() | BidomainProblem< DIM > | |
BidomainWithBathProblem(AbstractCardiacCellFactory< DIM > *pCellFactory) | BidomainWithBathProblem< DIM > | |
BidomainWithBathProblem() | BidomainWithBathProblem< DIM > | |
boost::serialization::access | BidomainWithBathProblem< DIM > | friend |
CloseFilesAndPostProcess() | AbstractCardiacProblem< DIM, DIM, 2 > | |
CreateCardiacTissue() | BidomainProblem< DIM > | protectedvirtual |
CreateInitialCondition() | BidomainProblem< DIM > | protectedvirtual |
CreateMeshFromHeartConfig() | AbstractCardiacProblem< DIM, DIM, 2 > | protectedvirtual |
CreateSolver() | BidomainProblem< DIM > | protectedvirtual |
DefineExtraVariablesWriterColumns(bool extending) | AbstractCardiacProblem< DIM, DIM, 2 > | |
DefineWriterColumns(bool extending) | BidomainProblem< DIM > | virtual |
GetBidomainTissue() | BidomainProblem< DIM > | |
GetCurrentTime() | AbstractCardiacProblem< DIM, DIM, 2 > | |
GetDataReader() | AbstractCardiacProblem< DIM, DIM, 2 > | |
GetHasBath() | BidomainProblem< DIM > | virtual |
GetSolution() | AbstractCardiacProblem< DIM, DIM, 2 > | |
GetSolutionDistributedVector() | AbstractCardiacProblem< DIM, DIM, 2 > | |
GetTissue() | AbstractCardiacProblem< DIM, DIM, 2 > | |
Initialise() | AbstractCardiacProblem< DIM, DIM, 2 > | |
InitialiseWriter() | AbstractCardiacProblem< DIM, DIM, 2 > | |
load(Archive &archive, const unsigned int version) | BidomainProblem< DIM > | inlineprivate |
LoadBoundaryConditions(Archive &archive, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractCardiacProblem< DIM, DIM, 2 > | inlineprivate |
LoadExtraArchive(Archive &archive, unsigned version) | AbstractCardiacProblem< DIM, DIM, 2 > | |
LoadExtraArchiveForBidomain(Archive &archive, unsigned version) | BidomainProblem< DIM > | |
mAllocatedMemoryForMesh | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mCurrentTime | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mExtracelluarColumnId | BidomainProblem< DIM > | protected |
mExtraVariablesId | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mFixedExtracellularPotentialNodes | BidomainProblem< DIM > | protected |
mHasBath | BidomainProblem< DIM > | protected |
mHdf5DataWriterChunkSizeAndAlignment | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mMeshFilename | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mNodeColumnId | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mNodesToOutput | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mOutputModifiers | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mpBidomainTissue | BidomainProblem< DIM > | protected |
mpBoundaryConditionsContainer | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mpCardiacTissue | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mpCellFactory | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mpDefaultBoundaryConditionsContainer | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mpElectrodes | BidomainProblem< DIM > | protected |
mpMesh | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mPrintOutput | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mpSolver | BidomainProblem< DIM > | protected |
mpTimeAdaptivityController | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mpWriter | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mRowForAverageOfPhiZeroed | BidomainProblem< DIM > | protected |
mSolution | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mTimeColumnId | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mUseHdf5DataWriterCache | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mVoltageColumnId | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
mWriteInfo | AbstractCardiacProblem< DIM, DIM, 2 > | protected |
OnEndOfTimestep(double time) | BidomainProblem< DIM > | virtual |
PreSolveChecks() | BidomainProblem< DIM > | virtual |
PrintOutput(bool rPrintOutput) | AbstractCardiacProblem< DIM, DIM, 2 > | |
rGetMesh() | AbstractCardiacProblem< DIM, DIM, 2 > | |
save(Archive &archive, const unsigned int version) const | BidomainProblem< DIM > | inlineprivate |
SaveBoundaryConditions(Archive &archive, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BccType pBcc) const | AbstractCardiacProblem< DIM, DIM, 2 > | inlineprivate |
serialize(Archive &archive, const unsigned int version) | BidomainWithBathProblem< DIM > | inlineprivate |
SetBoundaryConditionsContainer(BccType pBcc) | AbstractCardiacProblem< DIM, DIM, 2 > | |
SetElectrodes() | BidomainProblem< DIM > | virtual |
SetFixedExtracellularPotentialNodes(std::vector< unsigned > nodes) | BidomainProblem< DIM > | |
SetHdf5DataWriterTargetChunkSizeAndAlignment(hsize_t size) | AbstractCardiacProblem< DIM, DIM, 2 > | |
SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractCardiacProblem< DIM, DIM, 2 > | |
SetNodeForAverageOfPhiZeroed(unsigned node) | BidomainProblem< DIM > | |
SetNodesPerProcessorFilename(const std::string &rFilename) | AbstractCardiacProblem< DIM, DIM, 2 > | |
SetOutputNodes(std::vector< unsigned > &rNodesToOutput) | AbstractCardiacProblem< DIM, DIM, 2 > | |
SetUpAdditionalStoppingTimes(std::vector< double > &rAdditionalStoppingTimes) | BidomainProblem< DIM > | virtual |
SetUseHdf5DataWriterCache(bool useCache=true) | AbstractCardiacProblem< DIM, DIM, 2 > | |
SetUseTimeAdaptivityController(bool useAdaptivity, AbstractTimeAdaptivityController *pController=NULL) | AbstractCardiacProblem< DIM, DIM, 2 > | |
SetWriteInfo(bool writeInfo=true) | AbstractCardiacProblem< DIM, DIM, 2 > | |
Solve() | AbstractCardiacProblem< DIM, DIM, 2 > | |
WriteExtraVariablesOneStep() | AbstractCardiacProblem< DIM, DIM, 2 > | |
WriteInfo(double time) | BidomainProblem< DIM > | virtual |
WriteOneStep(double time, Vec voltageVec) | BidomainProblem< DIM > | virtual |
~AbstractCardiacProblem() | AbstractCardiacProblem< DIM, DIM, 2 > | virtual |
~AbstractUntemplatedCardiacProblem() | AbstractUntemplatedCardiacProblem | inlinevirtual |
~BidomainWithBathProblem() | BidomainWithBathProblem< DIM > | |