| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh) | AbstractCellPopulation< DIM > | protected |
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< DIM > | |
| AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh) | AbstractOnLatticeCellPopulation< DIM > | protected |
| AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false) | AbstractOnLatticeCellPopulation< DIM > | |
| AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< DIM, DIM > > pCellWriter, CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| AbstractOnLatticeCellPopulation::AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter, CellPtr pCell)=0 | AbstractCellPopulation< DIM > | pure virtual |
| AcceptCellWritersAcrossPopulation() | AbstractCellPopulation< DIM > | protectedvirtual |
| AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< DIM, DIM > > pPopulationCountWriter) | CaBasedCellPopulation< DIM > | virtual |
| AbstractOnLatticeCellPopulation::AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationCountWriter)=0 | AbstractCellPopulation< DIM > | pure virtual |
| AcceptPopulationEventWriter(boost::shared_ptr< AbstractCellPopulationEventWriter< DIM, DIM > > pPopulationEventWriter) | CaBasedCellPopulation< DIM > | virtual |
| AbstractOnLatticeCellPopulation::AcceptPopulationEventWriter(boost::shared_ptr< AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationEventWriter)=0 | AbstractCellPopulation< DIM > | pure virtual |
| AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< DIM, DIM > > pPopulationWriter) | CaBasedCellPopulation< DIM > | virtual |
| AbstractOnLatticeCellPopulation::AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)=0 | AbstractCellPopulation< DIM > | pure virtual |
| AddCell(CellPtr pNewCell, CellPtr pParentCell=CellPtr()) | CaBasedCellPopulation< DIM > | virtual |
| AddCellPopulationCountWriter() | AbstractCellPopulation< DIM > | inline |
| AddCellPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationCountWriter) | AbstractCellPopulation< DIM > | inline |
| AddCellPopulationEventWriter() | AbstractCellPopulation< DIM > | inline |
| AddCellPopulationEventWriter(boost::shared_ptr< AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationEventWriter) | AbstractCellPopulation< DIM > | inline |
| AddCellUsingLocationIndex(unsigned index, CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| AddCellWriter() | AbstractCellPopulation< DIM > | inline |
| AddCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter) | AbstractCellPopulation< DIM > | inline |
| AddDivisionInformation(std::string divisionInformation) | AbstractCellPopulation< DIM > | |
| AddPopulationWriter() | AbstractCellPopulation< DIM > | inline |
| AddPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter) | AbstractCellPopulation< DIM > | inline |
| AddRemovalInformation(std::string removalInformation) | AbstractCellPopulation< DIM > | |
| AddUpdateRule(boost::shared_ptr< AbstractUpdateRule< DIM > > pUpdateRule) | CaBasedCellPopulation< DIM > | virtual |
| Begin() | AbstractCellPopulation< DIM > | |
| boost::serialization::access (defined in CaBasedCellPopulation< DIM >) | CaBasedCellPopulation< DIM > | friend |
| CaBasedCellPopulation(PottsMesh< DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices, unsigned latticeCarryingCapacity=1u, bool deleteMesh=false, bool validate=false) | CaBasedCellPopulation< DIM > | |
| CaBasedCellPopulation(PottsMesh< DIM > &rMesh) | CaBasedCellPopulation< DIM > | |
| ClearDivisionsInformation() | AbstractCellPopulation< DIM > | |
| ClearRemovalsInformation() | AbstractCellPopulation< DIM > | |
| CloseRoundRobinWritersFiles() | AbstractCellPopulation< DIM > | private |
| CloseWritersFiles() | AbstractCellPopulation< DIM > | virtual |
| CreateOrderedPair(unsigned index1, unsigned index2) | AbstractCellPopulation< DIM > | |
| End() | AbstractCellPopulation< DIM > | |
| EvaluateDivisionPropensity(unsigned currentNodeIndex, unsigned targetNodeIndex, CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| GenerateRemovalInformation(CellPtr pCell, std::string killerInfo) | AbstractCellPopulation< DIM > | |
| GetCaBasedDivisionRule() | CaBasedCellPopulation< DIM > | |
| GetCellAncestors() | AbstractCellPopulation< DIM > | |
| GetCellCyclePhaseCount() | AbstractCellPopulation< DIM > | |
| GetCellDataItemAtPdeNode(unsigned pdeNodeIndex, std::string &rVariableName, bool dirichletBoundaryConditionApplies=false, double dirichletBoundaryValue=0.0) | CaBasedCellPopulation< DIM > | virtual |
| GetCellMutationStateCount() | AbstractCellPopulation< DIM > | |
| GetCellProliferativeTypeCount() | AbstractCellPopulation< DIM > | |
| GetCellPropertyRegistry() | AbstractCellPopulation< DIM > | |
| GetCellsUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | |
| GetCellUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | virtual |
| GetCentroidOfCellPopulation() | AbstractCellPopulation< DIM > | |
| GetDefaultTimeStep() | AbstractOnLatticeCellPopulation< DIM > | virtual |
| GetDivisionsInformation() | AbstractCellPopulation< DIM > | |
| GetIdentifier() const | Identifiable | |
| GetIterateRandomlyOverUpdateRuleCollection() | AbstractOnLatticeCellPopulation< DIM > | |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< DIM > | |
| GetLocationOfCellCentre(CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| GetNeighbouringEdgeIndices(CellPtr pCell, unsigned pEdgeIndex) | AbstractCellPopulation< DIM > | virtual |
| GetNeighbouringLocationIndices(CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| GetNeighbouringNodeIndices(unsigned index) | AbstractOnLatticeCellPopulation< DIM > | virtual |
| GetNode(unsigned index) | CaBasedCellPopulation< DIM > | virtual |
| GetNodeCorrespondingToCell(CellPtr pCell) | CaBasedCellPopulation< DIM > | |
| GetNumAllCells() | AbstractCellPopulation< DIM > | |
| GetNumNodes() | CaBasedCellPopulation< DIM > | virtual |
| GetNumRealCells() | AbstractCellPopulation< DIM > | |
| GetOutputResultsForChasteVisualizer() | AbstractCellPopulation< DIM > | |
| GetRemovalsInformation() | AbstractCellPopulation< DIM > | |
| GetSizeOfCellPopulation() | AbstractCellPopulation< DIM > | |
| GetTetrahedralMeshForPdeModifier() | CaBasedCellPopulation< DIM > | virtual |
| GetUpdateNodesInRandomOrder() | AbstractOnLatticeCellPopulation< DIM > | |
| GetUpdateRuleCollection() const | CaBasedCellPopulation< DIM > | virtual |
| GetVolumeOfCell(CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| GetWidth(const unsigned &rDimension) | CaBasedCellPopulation< DIM > | virtual |
| HasWriter() const | AbstractCellPopulation< DIM > | inline |
| InitialiseCells() | AbstractCellPopulation< DIM > | |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| IsCellAttachedToLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | virtual |
| IsPdeNodeAssociatedWithNonApoptoticCell(unsigned pdeNodeIndex) | CaBasedCellPopulation< DIM > | virtual |
| IsRoomToDivide(CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| IsSiteAvailable(unsigned index, CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| KillCell(CellPtr pCell, std::string killerInfo) | AbstractCellPopulation< DIM > | |
| mAvailableSpaces | CaBasedCellPopulation< DIM > | private |
| mCellLocationMap | AbstractCellPopulation< DIM > | protected |
| mCellPopulationCountWriters | AbstractCellPopulation< DIM > | protected |
| mCellPopulationEventWriters | AbstractCellPopulation< DIM > | protected |
| mCellPopulationWriters | AbstractCellPopulation< DIM > | protected |
| mCells | AbstractCellPopulation< DIM > | protected |
| mCellWriters | AbstractCellPopulation< DIM > | protected |
| mCentroid | AbstractCellPopulation< DIM > | protected |
| mDeleteMesh | AbstractOnLatticeCellPopulation< DIM > | protected |
| mDivisionsInformation | AbstractCellPopulation< DIM > | protected |
| mIterateRandomlyOverUpdateRuleCollection | AbstractOnLatticeCellPopulation< DIM > | protected |
| mLatticeCarryingCapacity | CaBasedCellPopulation< DIM > | private |
| mLocationCellMap | AbstractCellPopulation< DIM > | protected |
| mOutputResultsForChasteVisualizer | AbstractCellPopulation< DIM > | protected |
| MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index) | AbstractCellPopulation< DIM > | |
| mpCaBasedDivisionRule | CaBasedCellPopulation< DIM > | private |
| mpCellPropertyRegistry | AbstractCellPopulation< DIM > | protected |
| mpVtkMetaFile | AbstractCellPopulation< DIM > | protected |
| mRemovalsInformation | AbstractCellPopulation< DIM > | protected |
| mrMesh | AbstractCellPopulation< DIM > | protected |
| mSwitchingUpdateRuleCollection | CaBasedCellPopulation< DIM > | private |
| mUpdateNodesInRandomOrder | AbstractOnLatticeCellPopulation< DIM > | protected |
| mUpdateRuleCollection | AbstractOnLatticeCellPopulation< DIM > | protected |
| OpenRoundRobinWritersFilesForAppend(OutputFileHandler &rOutputFileHandler) | AbstractCellPopulation< DIM > | private |
| OpenWritersFiles(OutputFileHandler &rOutputFileHandler) | CaBasedCellPopulation< DIM > | virtual |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< DIM > | |
| OutputCellPopulationParameters(out_stream &rParamsFile) | CaBasedCellPopulation< DIM > | virtual |
| RemoveAllUpdateRules() | CaBasedCellPopulation< DIM > | virtual |
| RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell) | CaBasedCellPopulation< DIM > | virtual |
| RemoveDeadCells() | CaBasedCellPopulation< DIM > | virtual |
| rGetAvailableSpaces() | CaBasedCellPopulation< DIM > | |
| rGetCells() | AbstractCellPopulation< DIM > | |
| rGetMesh() | CaBasedCellPopulation< DIM > | |
| rGetMesh() const | CaBasedCellPopulation< DIM > | |
| serialize(Archive &archive, const unsigned int version) | CaBasedCellPopulation< DIM > | inlineprivate |
| SetCaBasedDivisionRule(boost::shared_ptr< AbstractCaBasedDivisionRule< DIM > > pCaBasedDivisionRule) | CaBasedCellPopulation< DIM > | |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< DIM > | |
| SetCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< DIM > | |
| SetDataOnAllCells(const std::string &rDataName, double dataValue) | AbstractCellPopulation< DIM > | |
| SetDefaultCellMutationStateAndProliferativeTypeOrdering() | AbstractCellPopulation< DIM > | |
| SetEmptySites(const std::set< unsigned > &rEmptySiteIndices) | CaBasedCellPopulation< DIM > | private |
| SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly) | AbstractOnLatticeCellPopulation< DIM > | |
| SetNode(unsigned index, ChastePoint< DIM > &rNewLocation) | AbstractOnLatticeCellPopulation< DIM > | |
| AbstractCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > &rNewLocation)=0 | AbstractCellPopulation< DIM > | pure virtual |
| SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer) | AbstractCellPopulation< DIM > | |
| SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder) | AbstractOnLatticeCellPopulation< DIM > | |
| SimulationSetupHook(AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > *pSimulation) | AbstractCellPopulation< DIM > | virtual |
| StartApoptosisOnCell(CellPtr pCell, std::string killerInfo) | AbstractCellPopulation< DIM > | |
| TestCaBasedCellPopulation (defined in CaBasedCellPopulation< DIM >) | CaBasedCellPopulation< DIM > | friend |
| TidyTemplatedExportIdentifier(std::string identifier) const | Identifiable | private |
| Update(bool hasHadBirthsOrDeaths=true) | CaBasedCellPopulation< DIM > | virtual |
| UpdateCellLocations(double dt) | CaBasedCellPopulation< DIM > | virtual |
| UpdateCellProcessLocation() | AbstractCellPopulation< DIM > | virtual |
| Validate() | CaBasedCellPopulation< DIM > | privatevirtual |
| WriteDataToVisualizerSetupFile(out_stream &pVizSetupFile) | AbstractCellPopulation< DIM > | virtual |
| WriteResultsToFiles(const std::string &rDirectory) | AbstractCellPopulation< DIM > | virtual |
| WriteVtkResultsToFile(const std::string &rDirectory) | CaBasedCellPopulation< DIM > | privatevirtual |
| ~AbstractCellPopulation() | AbstractCellPopulation< DIM > | virtual |
| ~AbstractOnLatticeCellPopulation() | AbstractOnLatticeCellPopulation< DIM > | virtual |
| ~CaBasedCellPopulation() | CaBasedCellPopulation< DIM > | virtual |
| ~Identifiable() | Identifiable | virtual |
1.9.8