| AbstractOdeSrnModel(const AbstractOdeSrnModel &rModel) | AbstractOdeSrnModel | protected |
| AbstractOdeSrnModel(unsigned stateSize, boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | AbstractOdeSrnModel | |
| AbstractSrnModel(const AbstractSrnModel &rModel) | AbstractSrnModel | protected |
| AbstractSrnModel() | AbstractSrnModel | |
| AddMergedEdgeSrn(AbstractSrnModel *pMergedEdgeSrn) | DeltaNotchEdgeSrnModel | virtual |
| AddShrunkEdgeSrn(AbstractSrnModel *pShrunkEdgeSrn) | DeltaNotchEdgeSrnModel | virtual |
| AddShrunkEdgeToInterior(AbstractSrnModel *pShrunkEdgeSrn) | AbstractSrnModel | virtual |
| AddSrnQuantities(AbstractSrnModel *pOtherSrn, const double scale=1.0) | DeltaNotchEdgeSrnModel | virtual |
| AdjustOdeParameters(double currentTime) | CellCycleModelOdeHandler | protectedvirtual |
| boost::serialization::access | DeltaNotchEdgeSrnModel | friend |
| CellCycleModelOdeHandler(const CellCycleModelOdeHandler &rHandler) | CellCycleModelOdeHandler | protected |
| CellCycleModelOdeHandler(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | CellCycleModelOdeHandler | |
| CreateSrnModel() | DeltaNotchEdgeSrnModel | virtual |
| DeltaNotchEdgeSrnModel(const DeltaNotchEdgeSrnModel &rModel) | DeltaNotchEdgeSrnModel | protected |
| DeltaNotchEdgeSrnModel(boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | DeltaNotchEdgeSrnModel | |
| GetCell() | AbstractSrnModel | |
| GetDelta() | DeltaNotchEdgeSrnModel | |
| GetDt() | CellCycleModelOdeHandler | |
| GetEdgeLocalIndex() | AbstractSrnModel | |
| GetIdentifier() const | Identifiable | |
| GetInteriorDelta() const | DeltaNotchEdgeSrnModel | |
| GetInteriorNotch() const | DeltaNotchEdgeSrnModel | |
| GetNeighbouringDelta() const | DeltaNotchEdgeSrnModel | |
| GetNotch() | DeltaNotchEdgeSrnModel | |
| GetOdeSolver() const | CellCycleModelOdeHandler | |
| GetOdeSystem() const | CellCycleModelOdeHandler | |
| GetProteinConcentrations() const | CellCycleModelOdeHandler | |
| GetSimulatedToTime() const | AbstractSrnModel | |
| HasEdgeModel() const | AbstractSrnModel | |
| Initialise() | DeltaNotchEdgeSrnModel | virtual |
| AbstractOdeSrnModel::Initialise(AbstractOdeSystem *pOdeSystem) | AbstractOdeSrnModel | protected |
| InitialiseDaughterCell() | DeltaNotchEdgeSrnModel | virtual |
| mDt | CellCycleModelOdeHandler | protected |
| mEdgeLocalIndex | AbstractSrnModel | protected |
| mFinishedRunningOdes | CellCycleModelOdeHandler | protected |
| mInitialConditions | AbstractOdeSrnModel | protected |
| mIsEdgeBasedModel | AbstractSrnModel | protected |
| mLastTime | CellCycleModelOdeHandler | protected |
| mpCell | AbstractSrnModel | protected |
| mpOdeSolver | CellCycleModelOdeHandler | protected |
| mpOdeSystem | CellCycleModelOdeHandler | protected |
| mSimulatedToTime | AbstractSrnModel | protected |
| mStateSize | AbstractOdeSrnModel | protected |
| AbstractSrnModel::operator=(const AbstractSrnModel &) | AbstractSrnModel | private |
| OutputSrnModelInfo(out_stream &rParamsFile) | AbstractSrnModel | |
| OutputSrnModelParameters(out_stream &rParamsFile) | DeltaNotchEdgeSrnModel | virtual |
| ResetForDivision() | AbstractOdeSrnModel | virtual |
| ScaleSrnVariables(const double theta) | AbstractOdeSrnModel | virtual |
| serialize(Archive &archive, const unsigned int version) | DeltaNotchEdgeSrnModel | inlineprivate |
| SetCell(CellPtr pCell) | AbstractSrnModel | virtual |
| SetDelta(double value) | DeltaNotchEdgeSrnModel | |
| SetDt(double timeStep) | CellCycleModelOdeHandler | |
| SetEdgeLocalIndex(unsigned index) | AbstractSrnModel | |
| SetEdgeModelIndicator(const bool isEdgeModel) | AbstractSrnModel | |
| SetInitialConditions(std::vector< double > initialConditions) | AbstractOdeSrnModel | |
| SetLastTime(double lastTime) | CellCycleModelOdeHandler | |
| SetNotch(double value) | DeltaNotchEdgeSrnModel | |
| SetOdeSystem(AbstractOdeSystem *pOdeSystem) | CellCycleModelOdeHandler | |
| SetProteinConcentrationsForTestsOnly(double lastTime, std::vector< double > proteinConcentrations) | CellCycleModelOdeHandler | |
| SetSimulatedToTime(double simulatedToTime) | AbstractSrnModel | |
| SetStateVariables(const std::vector< double > &rStateVariables) | CellCycleModelOdeHandler | |
| SimulateToCurrentTime() | DeltaNotchEdgeSrnModel | virtual |
| SolveOdeToTime(double currentTime) | CellCycleModelOdeHandler | protected |
| SplitEdgeSrn(const double relativePosition) | DeltaNotchEdgeSrnModel | virtual |
| TidyTemplatedExportIdentifier(std::string identifier) const | Identifiable | private |
| UpdateDeltaNotch() | DeltaNotchEdgeSrnModel | |
| ~AbstractOdeSrnModel() | AbstractOdeSrnModel | virtual |
| ~AbstractSrnModel() | AbstractSrnModel | virtual |
| ~CellCycleModelOdeHandler() | CellCycleModelOdeHandler | virtual |
| ~Identifiable() | Identifiable | virtual |
1.9.8