Chaste
Commit::baa90ac2819b962188b7562f2326be23c47859a7
DeltaNotchSrnModel Member List
This is the complete list of members for
DeltaNotchSrnModel
, including all inherited members.
AbstractOdeSrnModel
(const AbstractOdeSrnModel &rModel)
AbstractOdeSrnModel
protected
AbstractOdeSrnModel
(unsigned stateSize, boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())
AbstractOdeSrnModel
AbstractSrnModel
(const AbstractSrnModel &rModel)
AbstractSrnModel
protected
AbstractSrnModel
()
AbstractSrnModel
AddMergedEdgeSrn
(AbstractSrnModel *pMergedEdgeSrn)
AbstractSrnModel
virtual
AddShrunkEdgeSrn
(AbstractSrnModel *pShrunkEdgeSrn)
AbstractSrnModel
virtual
AddShrunkEdgeToInterior
(AbstractSrnModel *pShrunkEdgeSrn)
AbstractSrnModel
virtual
AddSrnQuantities
(AbstractSrnModel *pOtherSrn, const double scale=1.0)
AbstractSrnModel
virtual
AdjustOdeParameters
(double currentTime)
CellCycleModelOdeHandler
protected
virtual
boost::serialization::access
DeltaNotchSrnModel
friend
CellCycleModelOdeHandler
(const CellCycleModelOdeHandler &rHandler)
CellCycleModelOdeHandler
protected
CellCycleModelOdeHandler
(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())
CellCycleModelOdeHandler
CreateSrnModel
()
DeltaNotchSrnModel
virtual
DeltaNotchSrnModel
(const DeltaNotchSrnModel &rModel)
DeltaNotchSrnModel
protected
DeltaNotchSrnModel
(boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())
DeltaNotchSrnModel
GetCell
()
AbstractSrnModel
GetDelta
()
DeltaNotchSrnModel
GetDt
()
CellCycleModelOdeHandler
GetEdgeLocalIndex
()
AbstractSrnModel
GetIdentifier
() const
Identifiable
GetMeanNeighbouringDelta
()
DeltaNotchSrnModel
GetNotch
()
DeltaNotchSrnModel
GetOdeSolver
() const
CellCycleModelOdeHandler
GetOdeSystem
() const
CellCycleModelOdeHandler
GetProteinConcentrations
() const
CellCycleModelOdeHandler
GetSimulatedToTime
() const
AbstractSrnModel
HasEdgeModel
() const
AbstractSrnModel
Initialise
()
DeltaNotchSrnModel
virtual
AbstractOdeSrnModel::Initialise
(AbstractOdeSystem *pOdeSystem)
AbstractOdeSrnModel
protected
InitialiseDaughterCell
()
AbstractSrnModel
virtual
mDt
CellCycleModelOdeHandler
protected
mEdgeLocalIndex
AbstractSrnModel
protected
mFinishedRunningOdes
CellCycleModelOdeHandler
protected
mInitialConditions
AbstractOdeSrnModel
protected
mIsEdgeBasedModel
AbstractSrnModel
protected
mLastTime
CellCycleModelOdeHandler
protected
mpCell
AbstractSrnModel
protected
mpOdeSolver
CellCycleModelOdeHandler
protected
mpOdeSystem
CellCycleModelOdeHandler
protected
mSimulatedToTime
AbstractSrnModel
protected
mStateSize
AbstractOdeSrnModel
protected
AbstractSrnModel::operator=
(const AbstractSrnModel &)
AbstractSrnModel
private
OutputSrnModelInfo
(out_stream &rParamsFile)
AbstractSrnModel
OutputSrnModelParameters
(out_stream &rParamsFile)
DeltaNotchSrnModel
virtual
ResetForDivision
()
AbstractOdeSrnModel
virtual
ScaleSrnVariables
(const double theta)
AbstractOdeSrnModel
virtual
serialize
(Archive &archive, const unsigned int version)
DeltaNotchSrnModel
inline
private
SetCell
(CellPtr pCell)
AbstractSrnModel
virtual
SetDt
(double timeStep)
CellCycleModelOdeHandler
SetEdgeLocalIndex
(unsigned index)
AbstractSrnModel
SetEdgeModelIndicator
(const bool isEdgeModel)
AbstractSrnModel
SetInitialConditions
(std::vector< double > initialConditions)
AbstractOdeSrnModel
SetLastTime
(double lastTime)
CellCycleModelOdeHandler
SetOdeSystem
(AbstractOdeSystem *pOdeSystem)
CellCycleModelOdeHandler
SetProteinConcentrationsForTestsOnly
(double lastTime, std::vector< double > proteinConcentrations)
CellCycleModelOdeHandler
SetSimulatedToTime
(double simulatedToTime)
AbstractSrnModel
SetStateVariables
(const std::vector< double > &rStateVariables)
CellCycleModelOdeHandler
SimulateToCurrentTime
()
DeltaNotchSrnModel
virtual
SolveOdeToTime
(double currentTime)
CellCycleModelOdeHandler
protected
SplitEdgeSrn
(const double relativePosition)
AbstractSrnModel
virtual
TidyTemplatedExportIdentifier
(std::string identifier) const
Identifiable
private
UpdateDeltaNotch
()
DeltaNotchSrnModel
~AbstractOdeSrnModel
()
AbstractOdeSrnModel
virtual
~AbstractSrnModel
()
AbstractSrnModel
virtual
~CellCycleModelOdeHandler
()
CellCycleModelOdeHandler
virtual
~Identifiable
()
Identifiable
virtual
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