AbstractBoxDomainPdeModifier(boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=boost::shared_ptr< AbstractLinearPde< DIM, DIM > >(), boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, boost::shared_ptr< ChasteCuboid< DIM > > pMeshCuboid=boost::shared_ptr< ChasteCuboid< DIM > >(), double stepSize=1.0, Vec solution=nullptr) | AbstractBoxDomainPdeModifier< DIM > | |
AbstractCellBasedSimulationModifier() | AbstractCellBasedSimulationModifier< DIM, DIM > | |
AbstractPdeModifier(boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=NULL, boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, Vec solution=nullptr) | AbstractPdeModifier< DIM > | |
AreBcsSetOnBoxBoundary() | AbstractBoxDomainPdeModifier< DIM > | |
boost::serialization::access | EllipticBoxDomainPdeModifier< DIM > | friend |
ConstructBoundaryConditionsContainer(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | EllipticBoxDomainPdeModifier< DIM > | virtual |
EllipticBoxDomainPdeModifier(boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=boost::shared_ptr< AbstractLinearPde< DIM, DIM > >(), boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, boost::shared_ptr< ChasteCuboid< DIM > > pMeshCuboid=boost::shared_ptr< ChasteCuboid< DIM > >(), double stepSize=1.0, Vec solution=nullptr) | EllipticBoxDomainPdeModifier< DIM > | |
GenerateFeMesh(boost::shared_ptr< ChasteCuboid< DIM > > pMeshCuboid, double stepSize) | AbstractBoxDomainPdeModifier< DIM > | |
GetBoundaryCondition() | AbstractPdeModifier< DIM > | |
GetFeMesh() const | AbstractPdeModifier< DIM > | |
GetIdentifier() const | Identifiable | |
GetOutputGradient() | AbstractPdeModifier< DIM > | |
GetPde() | AbstractPdeModifier< DIM > | |
GetSolution() | AbstractPdeModifier< DIM > | |
GetSolution() const | AbstractPdeModifier< DIM > | |
GetStepSize() | AbstractBoxDomainPdeModifier< DIM > | |
HasAveragedSourcePde() | AbstractPdeModifier< DIM > | |
InitialiseCellPdeElementMap(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | AbstractBoxDomainPdeModifier< DIM > | |
IsNeumannBoundaryCondition() | AbstractPdeModifier< DIM > | |
mCellPdeElementMap | AbstractBoxDomainPdeModifier< DIM > | protected |
mDeleteFeMesh | AbstractPdeModifier< DIM > | protected |
mDependentVariableName | AbstractPdeModifier< DIM > | protected |
mIsNeumannBoundaryCondition | AbstractPdeModifier< DIM > | protected |
mOutputDirectory | AbstractPdeModifier< DIM > | protected |
mOutputGradient | AbstractPdeModifier< DIM > | protected |
mOutputSolutionAtPdeNodes | AbstractPdeModifier< DIM > | protected |
mpBoundaryCondition | AbstractPdeModifier< DIM > | protected |
mpFeMesh | AbstractPdeModifier< DIM > | protected |
mpMeshCuboid | AbstractBoxDomainPdeModifier< DIM > | protected |
mpPde | AbstractPdeModifier< DIM > | protected |
mpVizPdeSolutionResultsFile | AbstractPdeModifier< DIM > | protected |
mSetBcsOnBoxBoundary | AbstractBoxDomainPdeModifier< DIM > | protected |
mSolution | AbstractPdeModifier< DIM > | protected |
mStepSize | AbstractBoxDomainPdeModifier< DIM > | protected |
OutputSimulationModifierInfo(out_stream &rParamsFile) | AbstractCellBasedSimulationModifier< DIM, DIM > | |
OutputSimulationModifierParameters(out_stream &rParamsFile) | EllipticBoxDomainPdeModifier< DIM > | virtual |
rGetDependentVariableName() | AbstractPdeModifier< DIM > | |
serialize(Archive &archive, const unsigned int version) | EllipticBoxDomainPdeModifier< DIM > | inlineprivate |
SetBcsOnBoxBoundary(bool setBcsOnBoxBoundary) | AbstractBoxDomainPdeModifier< DIM > | |
SetDependentVariableName(const std::string &rName) | AbstractPdeModifier< DIM > | |
SetOutputGradient(bool outputGradient) | AbstractPdeModifier< DIM > | |
SetOutputSolutionAtPdeNodes(bool outputSolutionAtPdeNodes) | AbstractPdeModifier< DIM > | |
SetupSolve(AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory) | EllipticBoxDomainPdeModifier< DIM > | virtual |
AbstractCellBasedSimulationModifier< DIM, DIM >::SetupSolve(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, std::string outputDirectory)=0 | AbstractCellBasedSimulationModifier< DIM, DIM > | pure virtual |
SetUpSourceTermsForAveragedSourcePde(TetrahedralMesh< DIM, DIM > *pMesh, std::map< CellPtr, unsigned > *pCellPdeElementMap=nullptr) | AbstractPdeModifier< DIM > | |
TestEllipticBoxDomainPdeModifier (defined in EllipticBoxDomainPdeModifier< DIM >) | EllipticBoxDomainPdeModifier< DIM > | friend |
TidyTemplatedExportIdentifier(std::string identifier) const | Identifiable | private |
UpdateAtEndOfOutputTimeStep(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | AbstractPdeModifier< DIM > | virtual |
AbstractCellBasedSimulationModifier< DIM, DIM >::UpdateAtEndOfOutputTimeStep(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation) | AbstractCellBasedSimulationModifier< DIM, DIM > | inlinevirtual |
UpdateAtEndOfSolve(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | AbstractPdeModifier< DIM > | virtual |
AbstractCellBasedSimulationModifier< DIM, DIM >::UpdateAtEndOfSolve(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation) | AbstractCellBasedSimulationModifier< DIM, DIM > | inlinevirtual |
UpdateAtEndOfTimeStep(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | EllipticBoxDomainPdeModifier< DIM > | virtual |
AbstractCellBasedSimulationModifier< DIM, DIM >::UpdateAtEndOfTimeStep(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)=0 | AbstractCellBasedSimulationModifier< DIM, DIM > | pure virtual |
UpdateCellData(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | AbstractBoxDomainPdeModifier< DIM > | |
UpdateCellPdeElementMap(AbstractCellPopulation< DIM, DIM > &rCellPopulation) | AbstractBoxDomainPdeModifier< DIM > | |
~AbstractBoxDomainPdeModifier() | AbstractBoxDomainPdeModifier< DIM > | virtual |
~AbstractCellBasedSimulationModifier() | AbstractCellBasedSimulationModifier< DIM, DIM > | virtual |
~AbstractPdeModifier() | AbstractPdeModifier< DIM > | virtual |
~EllipticBoxDomainPdeModifier() | EllipticBoxDomainPdeModifier< DIM > | virtual |
~Identifiable() | Identifiable | virtual |