AbstractCardiacProblem(AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory) | AbstractCardiacProblem< DIM, DIM, 3 > | |
AbstractCardiacProblem() | AbstractCardiacProblem< DIM, DIM, 3 > | |
AddOutputModifier(boost::shared_ptr< AbstractOutputModifier > pOutputModifier) | AbstractCardiacProblem< DIM, DIM, 3 > | inline |
AnalyseMeshForBath() | ExtendedBidomainProblem< DIM > | protected |
AtBeginningOfTimestep(double time) | AbstractCardiacProblem< DIM, DIM, 3 > | inlinevirtual |
BccType typedef | AbstractCardiacProblem< DIM, DIM, 3 > | private |
boost::serialization::access | ExtendedBidomainProblem< DIM > | friend |
CloseFilesAndPostProcess() | AbstractCardiacProblem< DIM, DIM, 3 > | |
CreateCardiacTissue() | ExtendedBidomainProblem< DIM > | protectedvirtual |
CreateInitialCondition() | ExtendedBidomainProblem< DIM > | protectedvirtual |
CreateMeshFromHeartConfig() | AbstractCardiacProblem< DIM, DIM, 3 > | protectedvirtual |
CreateSolver() | ExtendedBidomainProblem< DIM > | protectedvirtual |
DefineExtraVariablesWriterColumns(bool extending) | AbstractCardiacProblem< DIM, DIM, 3 > | |
DefineWriterColumns(bool extending) | ExtendedBidomainProblem< DIM > | virtual |
ExtendedBidomainProblem(AbstractCardiacCellFactory< DIM > *pCellFactory, AbstractCardiacCellFactory< DIM > *pSecondCellFactory, bool hasBath=false) | ExtendedBidomainProblem< DIM > | |
ExtendedBidomainProblem() | ExtendedBidomainProblem< DIM > | |
GetCurrentTime() | AbstractCardiacProblem< DIM, DIM, 3 > | |
GetDataReader() | AbstractCardiacProblem< DIM, DIM, 3 > | |
GetExtendedBidomainTissue() | ExtendedBidomainProblem< DIM > | |
GetHasBath() | ExtendedBidomainProblem< DIM > | virtual |
GetSolution() | AbstractCardiacProblem< DIM, DIM, 3 > | |
GetSolutionDistributedVector() | AbstractCardiacProblem< DIM, DIM, 3 > | |
GetTissue() | AbstractCardiacProblem< DIM, DIM, 3 > | |
Initialise() | AbstractCardiacProblem< DIM, DIM, 3 > | |
InitialiseWriter() | AbstractCardiacProblem< DIM, DIM, 3 > | |
load(Archive &archive, const unsigned int version) | ExtendedBidomainProblem< DIM > | inlineprivate |
LoadBoundaryConditions(Archive &archive, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractCardiacProblem< DIM, DIM, 3 > | inlineprivate |
LoadExtraArchive(Archive &archive, unsigned version) | AbstractCardiacProblem< DIM, DIM, 3 > | |
mAllocatedMemoryForMesh | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mAmFirstCell | ExtendedBidomainProblem< DIM > | protected |
mAmGap | ExtendedBidomainProblem< DIM > | protected |
mAmSecondCell | ExtendedBidomainProblem< DIM > | protected |
mApplyAveragePhieZeroConstraintAfterSolving | ExtendedBidomainProblem< DIM > | protected |
mCmFirstCell | ExtendedBidomainProblem< DIM > | protected |
mCmSecondCell | ExtendedBidomainProblem< DIM > | protected |
mCurrentTime | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mExtraVariablesId | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mFixedExtracellularPotentialNodes | ExtendedBidomainProblem< DIM > | protected |
mGGap | ExtendedBidomainProblem< DIM > | protected |
mGgapHeterogeneityRegions | ExtendedBidomainProblem< DIM > | protected |
mGgapHeterogenousValues | ExtendedBidomainProblem< DIM > | protected |
mHasBath | ExtendedBidomainProblem< DIM > | protected |
mHdf5DataWriterChunkSizeAndAlignment | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mIntracellularConductivitiesSecondCell | ExtendedBidomainProblem< DIM > | protected |
mMeshFilename | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mNodeColumnId | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mNodesToOutput | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mOutputModifiers | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mpBoundaryConditionsContainer | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mpCardiacTissue | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mpCellFactory | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mpDefaultBoundaryConditionsContainer | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mpExtendedBidomainTissue | ExtendedBidomainProblem< DIM > | protected |
mpExtracellularStimulusFactory | ExtendedBidomainProblem< DIM > | protected |
mpMesh | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mPrintOutput | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mpSecondCellFactory | ExtendedBidomainProblem< DIM > | protected |
mpSolver | ExtendedBidomainProblem< DIM > | protected |
mpTimeAdaptivityController | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mpWriter | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mRowForAverageOfPhiZeroed | ExtendedBidomainProblem< DIM > | protected |
mSolution | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mTimeColumnId | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mUseHdf5DataWriterCache | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mUserHasSetBidomainValuesExplicitly | ExtendedBidomainProblem< DIM > | protected |
mUserSpecifiedSecondCellConductivities | ExtendedBidomainProblem< DIM > | protected |
mUserSuppliedExtracellularStimulus | ExtendedBidomainProblem< DIM > | protected |
mVariablesIDs | ExtendedBidomainProblem< DIM > | protected |
mVoltageColumnId | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
mVoltageColumnId_Phie | ExtendedBidomainProblem< DIM > | protected |
mVoltageColumnId_Vm1 | ExtendedBidomainProblem< DIM > | protected |
mVoltageColumnId_Vm2 | ExtendedBidomainProblem< DIM > | protected |
mWriteInfo | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
OnEndOfTimestep(double time) | AbstractCardiacProblem< DIM, DIM, 3 > | inlinevirtual |
PreSolveChecks() | ExtendedBidomainProblem< DIM > | virtual |
PrintOutput(bool rPrintOutput) | AbstractCardiacProblem< DIM, DIM, 3 > | |
ProcessExtracellularStimulus() | ExtendedBidomainProblem< DIM > | protected |
rGetMesh() | AbstractCardiacProblem< DIM, DIM, 3 > | |
save(Archive &archive, const unsigned int version) const | ExtendedBidomainProblem< DIM > | inlineprivate |
SaveBoundaryConditions(Archive &archive, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BccType pBcc) const | AbstractCardiacProblem< DIM, DIM, 3 > | inlineprivate |
SetBoundaryConditionsContainer(BccType pBcc) | AbstractCardiacProblem< DIM, DIM, 3 > | |
SetElectrodes() | AbstractCardiacProblem< DIM, DIM, 3 > | virtual |
SetExtendedBidomainParameters(double Am1, double Am2, double AmGap, double Cm1, double Cm2, double Ggap) | ExtendedBidomainProblem< DIM > | |
SetExtracellularStimulusFactory(AbstractStimulusFactory< DIM > *pFactory) | ExtendedBidomainProblem< DIM > | |
SetFixedExtracellularPotentialNodes(std::vector< unsigned > nodes) | ExtendedBidomainProblem< DIM > | |
SetGgapHeterogeneities(std::vector< boost::shared_ptr< AbstractChasteRegion< DIM > > > &rGgapHeterogeneityRegions, std::vector< double > &rGgapValues) | ExtendedBidomainProblem< DIM > | |
SetHasBath(bool hasBath) | ExtendedBidomainProblem< DIM > | |
SetHdf5DataWriterTargetChunkSizeAndAlignment(hsize_t size) | AbstractCardiacProblem< DIM, DIM, 3 > | |
SetIntracellularConductivitiesForSecondCell(c_vector< double, DIM > conductivities) | ExtendedBidomainProblem< DIM > | |
SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractCardiacProblem< DIM, DIM, 3 > | |
SetNodeForAverageOfPhiZeroed(unsigned node) | ExtendedBidomainProblem< DIM > | |
SetNodesPerProcessorFilename(const std::string &rFilename) | AbstractCardiacProblem< DIM, DIM, 3 > | |
SetOutputNodes(std::vector< unsigned > &rNodesToOutput) | AbstractCardiacProblem< DIM, DIM, 3 > | |
SetUpAdditionalStoppingTimes(std::vector< double > &rAdditionalStoppingTimes) | AbstractCardiacProblem< DIM, DIM, 3 > | inlinevirtual |
SetUseHdf5DataWriterCache(bool useCache=true) | AbstractCardiacProblem< DIM, DIM, 3 > | |
SetUseTimeAdaptivityController(bool useAdaptivity, AbstractTimeAdaptivityController *pController=NULL) | AbstractCardiacProblem< DIM, DIM, 3 > | |
SetWriteInfo(bool writeInfo=true) | AbstractCardiacProblem< DIM, DIM, 3 > | |
Solve() | AbstractCardiacProblem< DIM, DIM, 3 > | |
TestArchivingExtendedBidomain (defined in ExtendedBidomainProblem< DIM >) | ExtendedBidomainProblem< DIM > | friend |
WriteExtraVariablesOneStep() | AbstractCardiacProblem< DIM, DIM, 3 > | |
WriteInfo(double time) | ExtendedBidomainProblem< DIM > | virtual |
WriteOneStep(double time, Vec voltageVec) | ExtendedBidomainProblem< DIM > | virtual |
~AbstractCardiacProblem() | AbstractCardiacProblem< DIM, DIM, 3 > | virtual |
~AbstractUntemplatedCardiacProblem() | AbstractUntemplatedCardiacProblem | inlinevirtual |
~ExtendedBidomainProblem() | ExtendedBidomainProblem< DIM > | virtual |