Chaste Commit::1fd4e48e3990e67db148bc1bc4cf6991a0049d0c
ExtendedBidomainProblem< DIM > Member List

This is the complete list of members for ExtendedBidomainProblem< DIM >, including all inherited members.

AbstractCardiacProblem(AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory)AbstractCardiacProblem< DIM, DIM, 3 >
AbstractCardiacProblem()AbstractCardiacProblem< DIM, DIM, 3 >
AddOutputModifier(boost::shared_ptr< AbstractOutputModifier > pOutputModifier)AbstractCardiacProblem< DIM, DIM, 3 >inline
AnalyseMeshForBath()ExtendedBidomainProblem< DIM >protected
AtBeginningOfTimestep(double time)AbstractCardiacProblem< DIM, DIM, 3 >inlinevirtual
BccType typedefAbstractCardiacProblem< DIM, DIM, 3 >private
boost::serialization::accessExtendedBidomainProblem< DIM >friend
CloseFilesAndPostProcess()AbstractCardiacProblem< DIM, DIM, 3 >
CreateCardiacTissue()ExtendedBidomainProblem< DIM >protectedvirtual
CreateInitialCondition()ExtendedBidomainProblem< DIM >protectedvirtual
CreateMeshFromHeartConfig()AbstractCardiacProblem< DIM, DIM, 3 >protectedvirtual
CreateSolver()ExtendedBidomainProblem< DIM >protectedvirtual
DefineExtraVariablesWriterColumns(bool extending)AbstractCardiacProblem< DIM, DIM, 3 >
DefineWriterColumns(bool extending)ExtendedBidomainProblem< DIM >virtual
ExtendedBidomainProblem(AbstractCardiacCellFactory< DIM > *pCellFactory, AbstractCardiacCellFactory< DIM > *pSecondCellFactory, bool hasBath=false)ExtendedBidomainProblem< DIM >
ExtendedBidomainProblem()ExtendedBidomainProblem< DIM >
GetCurrentTime()AbstractCardiacProblem< DIM, DIM, 3 >
GetDataReader()AbstractCardiacProblem< DIM, DIM, 3 >
GetExtendedBidomainTissue()ExtendedBidomainProblem< DIM >
GetHasBath()ExtendedBidomainProblem< DIM >virtual
GetSolution()AbstractCardiacProblem< DIM, DIM, 3 >
GetSolutionDistributedVector()AbstractCardiacProblem< DIM, DIM, 3 >
GetTissue()AbstractCardiacProblem< DIM, DIM, 3 >
Initialise()AbstractCardiacProblem< DIM, DIM, 3 >
InitialiseWriter()AbstractCardiacProblem< DIM, DIM, 3 >
load(Archive &archive, const unsigned int version)ExtendedBidomainProblem< DIM >inlineprivate
LoadBoundaryConditions(Archive &archive, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)AbstractCardiacProblem< DIM, DIM, 3 >inlineprivate
LoadExtraArchive(Archive &archive, unsigned version)AbstractCardiacProblem< DIM, DIM, 3 >
mAllocatedMemoryForMeshAbstractCardiacProblem< DIM, DIM, 3 >protected
mAmFirstCellExtendedBidomainProblem< DIM >protected
mAmGapExtendedBidomainProblem< DIM >protected
mAmSecondCellExtendedBidomainProblem< DIM >protected
mApplyAveragePhieZeroConstraintAfterSolvingExtendedBidomainProblem< DIM >protected
mCmFirstCellExtendedBidomainProblem< DIM >protected
mCmSecondCellExtendedBidomainProblem< DIM >protected
mCurrentTimeAbstractCardiacProblem< DIM, DIM, 3 >protected
mExtraVariablesIdAbstractCardiacProblem< DIM, DIM, 3 >protected
mFixedExtracellularPotentialNodesExtendedBidomainProblem< DIM >protected
mGGapExtendedBidomainProblem< DIM >protected
mGgapHeterogeneityRegionsExtendedBidomainProblem< DIM >protected
mGgapHeterogenousValuesExtendedBidomainProblem< DIM >protected
mHasBathExtendedBidomainProblem< DIM >protected
mHdf5DataWriterChunkSizeAndAlignmentAbstractCardiacProblem< DIM, DIM, 3 >protected
mIntracellularConductivitiesSecondCellExtendedBidomainProblem< DIM >protected
mMeshFilenameAbstractCardiacProblem< DIM, DIM, 3 >protected
mNodeColumnIdAbstractCardiacProblem< DIM, DIM, 3 >protected
mNodesToOutputAbstractCardiacProblem< DIM, DIM, 3 >protected
mOutputModifiersAbstractCardiacProblem< DIM, DIM, 3 >protected
mpBoundaryConditionsContainerAbstractCardiacProblem< DIM, DIM, 3 >protected
mpCardiacTissueAbstractCardiacProblem< DIM, DIM, 3 >protected
mpCellFactoryAbstractCardiacProblem< DIM, DIM, 3 >protected
mpDefaultBoundaryConditionsContainerAbstractCardiacProblem< DIM, DIM, 3 >protected
mpExtendedBidomainTissueExtendedBidomainProblem< DIM >protected
mpExtracellularStimulusFactoryExtendedBidomainProblem< DIM >protected
mpMeshAbstractCardiacProblem< DIM, DIM, 3 >protected
mPrintOutputAbstractCardiacProblem< DIM, DIM, 3 >protected
mpSecondCellFactoryExtendedBidomainProblem< DIM >protected
mpSolverExtendedBidomainProblem< DIM >protected
mpTimeAdaptivityControllerAbstractCardiacProblem< DIM, DIM, 3 >protected
mpWriterAbstractCardiacProblem< DIM, DIM, 3 >protected
mRowForAverageOfPhiZeroedExtendedBidomainProblem< DIM >protected
mSolutionAbstractCardiacProblem< DIM, DIM, 3 >protected
mTimeColumnIdAbstractCardiacProblem< DIM, DIM, 3 >protected
mUseHdf5DataWriterCacheAbstractCardiacProblem< DIM, DIM, 3 >protected
mUserHasSetBidomainValuesExplicitlyExtendedBidomainProblem< DIM >protected
mUserSpecifiedSecondCellConductivitiesExtendedBidomainProblem< DIM >protected
mUserSuppliedExtracellularStimulusExtendedBidomainProblem< DIM >protected
mVariablesIDsExtendedBidomainProblem< DIM >protected
mVoltageColumnIdAbstractCardiacProblem< DIM, DIM, 3 >protected
mVoltageColumnId_PhieExtendedBidomainProblem< DIM >protected
mVoltageColumnId_Vm1ExtendedBidomainProblem< DIM >protected
mVoltageColumnId_Vm2ExtendedBidomainProblem< DIM >protected
mWriteInfoAbstractCardiacProblem< DIM, DIM, 3 >protected
OnEndOfTimestep(double time)AbstractCardiacProblem< DIM, DIM, 3 >inlinevirtual
PreSolveChecks()ExtendedBidomainProblem< DIM >virtual
PrintOutput(bool rPrintOutput)AbstractCardiacProblem< DIM, DIM, 3 >
ProcessExtracellularStimulus()ExtendedBidomainProblem< DIM >protected
rGetMesh()AbstractCardiacProblem< DIM, DIM, 3 >
save(Archive &archive, const unsigned int version) constExtendedBidomainProblem< DIM >inlineprivate
SaveBoundaryConditions(Archive &archive, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BccType pBcc) constAbstractCardiacProblem< DIM, DIM, 3 >inlineprivate
SetBoundaryConditionsContainer(BccType pBcc)AbstractCardiacProblem< DIM, DIM, 3 >
SetElectrodes()AbstractCardiacProblem< DIM, DIM, 3 >virtual
SetExtendedBidomainParameters(double Am1, double Am2, double AmGap, double Cm1, double Cm2, double Ggap)ExtendedBidomainProblem< DIM >
SetExtracellularStimulusFactory(AbstractStimulusFactory< DIM > *pFactory)ExtendedBidomainProblem< DIM >
SetFixedExtracellularPotentialNodes(std::vector< unsigned > nodes)ExtendedBidomainProblem< DIM >
SetGgapHeterogeneities(std::vector< boost::shared_ptr< AbstractChasteRegion< DIM > > > &rGgapHeterogeneityRegions, std::vector< double > &rGgapValues)ExtendedBidomainProblem< DIM >
SetHasBath(bool hasBath)ExtendedBidomainProblem< DIM >
SetHdf5DataWriterTargetChunkSizeAndAlignment(hsize_t size)AbstractCardiacProblem< DIM, DIM, 3 >
SetIntracellularConductivitiesForSecondCell(c_vector< double, DIM > conductivities)ExtendedBidomainProblem< DIM >
SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)AbstractCardiacProblem< DIM, DIM, 3 >
SetNodeForAverageOfPhiZeroed(unsigned node)ExtendedBidomainProblem< DIM >
SetNodesPerProcessorFilename(const std::string &rFilename)AbstractCardiacProblem< DIM, DIM, 3 >
SetOutputNodes(std::vector< unsigned > &rNodesToOutput)AbstractCardiacProblem< DIM, DIM, 3 >
SetUpAdditionalStoppingTimes(std::vector< double > &rAdditionalStoppingTimes)AbstractCardiacProblem< DIM, DIM, 3 >inlinevirtual
SetUseHdf5DataWriterCache(bool useCache=true)AbstractCardiacProblem< DIM, DIM, 3 >
SetUseTimeAdaptivityController(bool useAdaptivity, AbstractTimeAdaptivityController *pController=NULL)AbstractCardiacProblem< DIM, DIM, 3 >
SetWriteInfo(bool writeInfo=true)AbstractCardiacProblem< DIM, DIM, 3 >
Solve()AbstractCardiacProblem< DIM, DIM, 3 >
TestArchivingExtendedBidomain (defined in ExtendedBidomainProblem< DIM >)ExtendedBidomainProblem< DIM >friend
WriteExtraVariablesOneStep()AbstractCardiacProblem< DIM, DIM, 3 >
WriteInfo(double time)ExtendedBidomainProblem< DIM >virtual
WriteOneStep(double time, Vec voltageVec)ExtendedBidomainProblem< DIM >virtual
~AbstractCardiacProblem()AbstractCardiacProblem< DIM, DIM, 3 >virtual
~AbstractUntemplatedCardiacProblem()AbstractUntemplatedCardiacProbleminlinevirtual
~ExtendedBidomainProblem()ExtendedBidomainProblem< DIM >virtual