AbstractDynamicLinearPdeSolver(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
AbstractExtendedBidomainSolver(bool bathSimulation, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, ExtendedBidomainTissue< SPACE_DIM > *pTissue, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 3 > *pBcc) | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | |
AbstractLinearPdeSolver(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | inline |
CheckCompatibilityCondition() | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protectedvirtual |
ExtendedBidomainSolver(bool bathSimulation, AbstractTetrahedralMesh< ELEM_DIM, SPACE_DIM > *pMesh, ExtendedBidomainTissue< SPACE_DIM > *pTissue, BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, 3 > *pBoundaryConditions) | ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | |
FinaliseLinearSystem(Vec existingSolution) | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protectedvirtual |
FollowingSolveLinearSystem(Vec currentSolution) | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | inlinevirtual |
GenerateNullBasis() const | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protectedvirtual |
GetBoundaryConditions() | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | inline |
GetLinearSystem() | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | inline |
InitialiseForSolve(Vec initialSolution) | ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | privatevirtual |
InitialiseHdf5Writer() | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mBathSimulation | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protected |
mFilenamePrefix | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mFixedExtracellularPotentialNodes | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protected |
mIdealTimeStep | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mInitialCondition | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mLastWorkingTimeStep | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mMassMatrix | ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | private |
mMatrixIsAssembled | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mMatrixIsConstant | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mNullSpaceCreated | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protected |
mOutputDirectory | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mOutputToParallelVtk | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mOutputToTxt | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mOutputToVtk | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mpBoundaryConditions | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protected |
mpConfig | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protected |
mpExtendedBidomainAssembler | ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | private |
mpExtendedBidomainNeumannSurfaceTermAssembler | ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | private |
mpExtendedBidomainTissue | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protected |
mpHdf5Writer | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mpLinearSystem | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | protected |
mpMesh | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | protected |
mPrintingTimestepMultiple | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mpTimeAdaptivityController | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mRowForAverageOfPhiZeroed | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protected |
mTend | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mTimesSet | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mTstart | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mVariableColumnIds | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
mVecForConstructingRhs | ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | private |
PrepareForSetupLinearSystem(Vec existingSolution) | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | protectedvirtual |
SetFixedExtracellularPotentialNodes(std::vector< unsigned > fixedExtracellularPotentialNodes) | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | |
SetInitialCondition(Vec initialCondition) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetMatrixIsNotAssembled() | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetOutputDirectoryAndPrefix(std::string outputDirectory, std::string prefix) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetOutputToParallelVtk(bool output) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetOutputToTxt(bool output) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetOutputToVtk(bool output) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetPrintingTimestepMultiple(unsigned multiple) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetRowForAverageOfPhiZeroed(unsigned rowMeanPhiEZero) | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | |
SetTimeAdaptivityController(AbstractTimeAdaptivityController *pTimeAdaptivityController) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetTimes(double tStart, double tEnd) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetTimeStep(double dt) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | |
SetupLinearSystem(Vec currentSolution, bool computeMatrix) | ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | privatevirtual |
Solve() | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | virtual |
WriteOneStep(double time, Vec solution) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 3 > | protected |
~AbstractExtendedBidomainSolver() | AbstractExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | virtual |
~AbstractLinearPdeSolver() | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | inlinevirtual |
~ExtendedBidomainSolver() | ExtendedBidomainSolver< ELEM_DIM, SPACE_DIM > | |