| AbstractCardiacTissue(AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory, bool exchangeHalos=false) | AbstractCardiacTissue< SPACE_DIM > | |
| AbstractCardiacTissue(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractCardiacTissue< SPACE_DIM > | |
| boost::serialization::access | ExtendedBidomainTissue< SPACE_DIM > | friend |
| CalculateHaloNodesFromNodeExchange() | AbstractCardiacTissue< SPACE_DIM > | protected |
| CreateExtracellularConductivityTensors() | ExtendedBidomainTissue< SPACE_DIM > | private |
| CreateGGapConductivities() | ExtendedBidomainTissue< SPACE_DIM > | |
| CreateIntracellularConductivityTensor() | AbstractCardiacTissue< SPACE_DIM > | private |
| CreateIntracellularConductivityTensorSecondCell() | ExtendedBidomainTissue< SPACE_DIM > | |
| ExtendedBidomainTissue(AbstractCardiacCellFactory< SPACE_DIM > *pCellFactory, AbstractCardiacCellFactory< SPACE_DIM > *pCellFactorySecondCell, AbstractStimulusFactory< SPACE_DIM > *pExtracellularStimulusFactory) | ExtendedBidomainTissue< SPACE_DIM > | |
| ExtendedBidomainTissue(std::vector< AbstractCardiacCellInterface * > &rCellsDistributed, std::vector< AbstractCardiacCellInterface * > &rSecondCellsDistributed, std::vector< boost::shared_ptr< AbstractStimulusFunction > > &rExtraStimuliDistributed, std::vector< double > &rGgapsDistributed, AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *pMesh, c_vector< double, SPACE_DIM > intracellularConductivitiesSecondCell) | ExtendedBidomainTissue< SPACE_DIM > | |
| GetAmFirstCell() | ExtendedBidomainTissue< SPACE_DIM > | |
| GetAmGap() | ExtendedBidomainTissue< SPACE_DIM > | |
| GetAmSecondCell() | ExtendedBidomainTissue< SPACE_DIM > | |
| GetCardiacCell(unsigned globalIndex) | AbstractCardiacTissue< SPACE_DIM > | |
| GetCardiacCellOrHaloCell(unsigned globalIndex) | AbstractCardiacTissue< SPACE_DIM > | |
| GetCardiacSecondCell(unsigned globalIndex) | ExtendedBidomainTissue< SPACE_DIM > | |
| GetCmFirstCell() | ExtendedBidomainTissue< SPACE_DIM > | |
| GetCmSecondCell() | ExtendedBidomainTissue< SPACE_DIM > | |
| GetDoCacheReplication() | AbstractCardiacTissue< SPACE_DIM > | |
| GetExtracellularStimulus(unsigned globalIndex) | ExtendedBidomainTissue< SPACE_DIM > | |
| GetGGap() | ExtendedBidomainTissue< SPACE_DIM > | |
| GetIntracellularConductivitiesSecondCell() const | ExtendedBidomainTissue< SPACE_DIM > | |
| GetPurkinjeCell(unsigned globalIndex) | AbstractCardiacTissue< SPACE_DIM > | |
| HasPurkinje() | AbstractCardiacTissue< SPACE_DIM > | |
| HasTheUserSuppliedExtracellularStimulus() | ExtendedBidomainTissue< SPACE_DIM > | |
| load(Archive &archive, const unsigned int version) | AbstractCardiacTissue< SPACE_DIM > | inlineprivate |
| LoadCardiacCells(Archive &archive, const unsigned int version) | AbstractCardiacTissue< SPACE_DIM > | inline |
| LoadExtendedBidomainCells(Archive &archive, const unsigned int version, std::vector< AbstractCardiacCellInterface * > &rCells, std::vector< AbstractCardiacCellInterface * > &rSecondCells, std::vector< double > &rGgaps, AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *pMesh) | ExtendedBidomainTissue< SPACE_DIM > | inlinestatic |
| LoadExtracellularStimulus(Archive &archive, const unsigned int version, std::vector< boost::shared_ptr< AbstractStimulusFunction > > &rStimuli, AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *pMesh) | ExtendedBidomainTissue< SPACE_DIM > | inline |
| mAmFirstCell | ExtendedBidomainTissue< SPACE_DIM > | private |
| mAmGap | ExtendedBidomainTissue< SPACE_DIM > | private |
| mAmSecondCell | ExtendedBidomainTissue< SPACE_DIM > | private |
| mCellsDistributed | AbstractCardiacTissue< SPACE_DIM > | protected |
| mCellsDistributedSecondCell | ExtendedBidomainTissue< SPACE_DIM > | private |
| mCmFirstCell | ExtendedBidomainTissue< SPACE_DIM > | private |
| mCmSecondCell | ExtendedBidomainTissue< SPACE_DIM > | private |
| mDoCacheReplication | AbstractCardiacTissue< SPACE_DIM > | protected |
| mExchangeHalos | AbstractCardiacTissue< SPACE_DIM > | protected |
| mExtracellularStimuliDistributed | ExtendedBidomainTissue< SPACE_DIM > | private |
| mExtracellularStimulusCacheReplicated | ExtendedBidomainTissue< SPACE_DIM > | private |
| mFibreFilePathNoExtension | AbstractCardiacTissue< SPACE_DIM > | protected |
| mGGap | ExtendedBidomainTissue< SPACE_DIM > | private |
| mGgapCacheReplicated | ExtendedBidomainTissue< SPACE_DIM > | private |
| mGgapDistributed | ExtendedBidomainTissue< SPACE_DIM > | private |
| mGgapHeterogeneityRegions | ExtendedBidomainTissue< SPACE_DIM > | private |
| mGgapValues | ExtendedBidomainTissue< SPACE_DIM > | private |
| mHaloCellsDistributed | AbstractCardiacTissue< SPACE_DIM > | protected |
| mHaloGlobalToLocalIndexMap | AbstractCardiacTissue< SPACE_DIM > | protected |
| mHaloNodes | AbstractCardiacTissue< SPACE_DIM > | protected |
| mHasPurkinje | AbstractCardiacTissue< SPACE_DIM > | protected |
| mIionicCacheReplicated | AbstractCardiacTissue< SPACE_DIM > | protected |
| mIionicCacheReplicatedSecondCell | ExtendedBidomainTissue< SPACE_DIM > | private |
| mIntracellularConductivitiesSecondCell | ExtendedBidomainTissue< SPACE_DIM > | private |
| mIntracellularStimulusCacheReplicated | AbstractCardiacTissue< SPACE_DIM > | protected |
| mIntracellularStimulusCacheReplicatedSecondCell | ExtendedBidomainTissue< SPACE_DIM > | private |
| mMeshUnarchived | AbstractCardiacTissue< SPACE_DIM > | protected |
| mNodesToReceivePerProcess | AbstractCardiacTissue< SPACE_DIM > | protected |
| mNodesToSendPerProcess | AbstractCardiacTissue< SPACE_DIM > | protected |
| mpConductivityModifier | AbstractCardiacTissue< SPACE_DIM > | protected |
| mpConfig | AbstractCardiacTissue< SPACE_DIM > | protected |
| mpDistributedVectorFactory | AbstractCardiacTissue< SPACE_DIM > | protected |
| mpExtracellularConductivityTensors | ExtendedBidomainTissue< SPACE_DIM > | private |
| mpIntracellularConductivityTensors | AbstractCardiacTissue< SPACE_DIM > | protected |
| mpIntracellularConductivityTensorsSecondCell | ExtendedBidomainTissue< SPACE_DIM > | private |
| mpMesh | AbstractCardiacTissue< SPACE_DIM > | protected |
| mPurkinjeCellsDistributed | AbstractCardiacTissue< SPACE_DIM > | protected |
| mPurkinjeIionicCacheReplicated | AbstractCardiacTissue< SPACE_DIM > | protected |
| mPurkinjeIntracellularStimulusCacheReplicated | AbstractCardiacTissue< SPACE_DIM > | protected |
| mUserSuppliedExtracellularStimulus | ExtendedBidomainTissue< SPACE_DIM > | private |
| pGetMesh() const | AbstractCardiacTissue< SPACE_DIM > | |
| ReplicateAdditionalCaches() | ExtendedBidomainTissue< SPACE_DIM > | private |
| ReplicateCaches() | AbstractCardiacTissue< SPACE_DIM > | |
| rGetCellsDistributed() const | AbstractCardiacTissue< SPACE_DIM > | |
| rGetExtracellularConductivityTensor(unsigned elementIndex) | ExtendedBidomainTissue< SPACE_DIM > | virtual |
| rGetExtracellularStimulusCacheReplicated() | ExtendedBidomainTissue< SPACE_DIM > | |
| rGetExtracellularStimulusDistributed() const | ExtendedBidomainTissue< SPACE_DIM > | |
| rGetGapsDistributed() const | ExtendedBidomainTissue< SPACE_DIM > | |
| rGetGgapCacheReplicated() | ExtendedBidomainTissue< SPACE_DIM > | |
| rGetIionicCacheReplicated() | AbstractCardiacTissue< SPACE_DIM > | |
| rGetIionicCacheReplicatedSecondCell() | ExtendedBidomainTissue< SPACE_DIM > | |
| rGetIntracellularConductivityTensor(unsigned elementIndex) | AbstractCardiacTissue< SPACE_DIM > | |
| rGetIntracellularConductivityTensorSecondCell(unsigned elementIndex) | ExtendedBidomainTissue< SPACE_DIM > | |
| rGetIntracellularStimulusCacheReplicated() | AbstractCardiacTissue< SPACE_DIM > | |
| rGetIntracellularStimulusCacheReplicatedSecondCell() | ExtendedBidomainTissue< SPACE_DIM > | |
| rGetPurkinjeCellsDistributed() const | AbstractCardiacTissue< SPACE_DIM > | |
| rGetPurkinjeIionicCacheReplicated() | AbstractCardiacTissue< SPACE_DIM > | |
| rGetPurkinjeIntracellularStimulusCacheReplicated() | AbstractCardiacTissue< SPACE_DIM > | |
| rGetSecondCellsDistributed() const | ExtendedBidomainTissue< SPACE_DIM > | |
| save(Archive &archive, const unsigned int version) const | AbstractCardiacTissue< SPACE_DIM > | inlineprivate |
| SaveCardiacCells(Archive &archive, const unsigned int version) const | AbstractCardiacTissue< SPACE_DIM > | inline |
| SaveExtendedBidomainCells(Archive &archive, const unsigned int version) const | ExtendedBidomainTissue< SPACE_DIM > | inline |
| SaveExtracellularStimulus(Archive &archive, const unsigned int version) const | ExtendedBidomainTissue< SPACE_DIM > | inline |
| serialize(Archive &archive, const unsigned int version) | ExtendedBidomainTissue< SPACE_DIM > | inlineprivate |
| SetAmFirstCell(double value) | ExtendedBidomainTissue< SPACE_DIM > | |
| SetAmGap(double value) | ExtendedBidomainTissue< SPACE_DIM > | |
| SetAmSecondCell(double value) | ExtendedBidomainTissue< SPACE_DIM > | |
| SetCacheReplication(bool doCacheReplication) | AbstractCardiacTissue< SPACE_DIM > | |
| SetCmFirstCell(double value) | ExtendedBidomainTissue< SPACE_DIM > | |
| SetCmSecondCell(double value) | ExtendedBidomainTissue< SPACE_DIM > | |
| SetConductivityModifier(AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM > *pModifier) | AbstractCardiacTissue< SPACE_DIM > | |
| SetGGap(double value) | ExtendedBidomainTissue< SPACE_DIM > | |
| SetGgapHeterogeneities(std::vector< boost::shared_ptr< AbstractChasteRegion< SPACE_DIM > > > &rGgapHeterogeneityRegions, std::vector< double > rGgapValues) | ExtendedBidomainTissue< SPACE_DIM > | |
| SetIntracellularConductivitiesSecondCell(c_vector< double, SPACE_DIM > conductivities) | ExtendedBidomainTissue< SPACE_DIM > | |
| SetUpHaloCells(AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory) | AbstractCardiacTissue< SPACE_DIM > | protected |
| SetUserSuppliedExtracellularStimulus(bool flag) | ExtendedBidomainTissue< SPACE_DIM > | |
| SolveCellSystems(Vec existingSolution, double time, double nextTime, bool updateVoltage=false) | ExtendedBidomainTissue< SPACE_DIM > | virtual |
| TestExtendedBidomainTissue (defined in ExtendedBidomainTissue< SPACE_DIM >) | ExtendedBidomainTissue< SPACE_DIM > | friend |
| UpdateAdditionalCaches(unsigned globalIndex, unsigned localIndex, double nextTime) | ExtendedBidomainTissue< SPACE_DIM > | private |
| UpdateCaches(unsigned globalIndex, unsigned localIndex, double nextTime) | AbstractCardiacTissue< SPACE_DIM > | |
| UpdatePurkinjeCaches(unsigned globalIndex, unsigned localIndex, double nextTime) | AbstractCardiacTissue< SPACE_DIM > | |
| ~AbstractCardiacTissue() | AbstractCardiacTissue< SPACE_DIM > | virtual |
| ~ExtendedBidomainTissue() | ExtendedBidomainTissue< SPACE_DIM > | virtual |
1.9.8