| AbstractCardiacCell(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCell | |
| AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCellInterface | |
| AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
| AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
| AdjustOutOfRangeSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | virtual |
| boost::serialization::access | FakeBathCell | friend |
| CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
| CalculateStoppingEvent(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
| CheckForArchiveFix() | AbstractCardiacCell | private |
| CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | protected |
| Compute(double tStart, double tEnd, double tSamp=0.0) | AbstractCardiacCell | virtual |
| ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | virtual |
| ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
| ComputeExceptVoltage(double tStart, double tEnd) | FakeBathCell | virtual |
| DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | protected |
| DumpState(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | protected |
| DumpState(const std::string &rMessage, std::vector< double > Y, double time) | AbstractParameterisedSystem< std::vector< double > > | protected |
| EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | FakeBathCell | virtual |
| FakeBathCell(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | FakeBathCell | |
| GetAnyVariable(const std::string &rName, double time=0.0) | AbstractCardiacCell | virtual |
| AbstractOdeSystem::GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| AbstractOdeSystem::GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetIIonic(const std::vector< double > *pStateVariables=NULL) | FakeBathCell | virtual |
| GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetIntracellularAreaStimulus(double time) | AbstractCardiacCellInterface | |
| GetIntracellularCalciumConcentration() | FakeBathCell | virtual |
| GetIntracellularStimulus(double time) | AbstractCardiacCellInterface | |
| GetLookupTableCollection() | AbstractCardiacCellInterface | inlinevirtual |
| GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfParameters() const | AbstractCardiacCell | virtual |
| GetNumberOfStateVariables() const | AbstractCardiacCell | virtual |
| GetNumSlowValues() | AbstractCardiacCell | virtual |
| GetParameter(const std::string &rParameterName) | AbstractCardiacCell | virtual |
| GetParameter(unsigned parameterIndex) | AbstractCardiacCell | virtual |
| AbstractOdeSystem::GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| AbstractOdeSystem::GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | virtual |
| GetSolver() const | AbstractCardiacCellInterface | |
| GetStateMessage(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | private |
| GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetStdVecStateVariables() | AbstractCardiacCell | virtual |
| GetStimulus(double time) | AbstractCardiacCellInterface | |
| GetStimulusFunction() | AbstractCardiacCellInterface | |
| GetStimulusFunction() const | AbstractCardiacCellInterface | |
| GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
| GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
| GetUseAnalyticJacobian() | AbstractOdeSystem | |
| GetVoltage() | AbstractCardiacCell | virtual |
| GetVoltageIndex() | AbstractCardiacCellInterface | |
| HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasCellMLDefaultStimulus() | AbstractCardiacCellInterface | |
| HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| Init() | AbstractCardiacCell | |
| IsFastOnly() | AbstractCardiacCell | virtual |
| load(Archive &archive, const unsigned int version) | AbstractOdeSystem | inlineprivate |
| mDt | AbstractCardiacCell | protected |
| mFixedVoltage | AbstractCardiacCellInterface | protected |
| mHasDefaultStimulusFromCellML | AbstractCardiacCellInterface | protected |
| mIsUsedInTissue | AbstractCardiacCellInterface | protected |
| mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | protected |
| mParameters | AbstractParameterisedSystem< std::vector< double > > | protected |
| mpIntracellularStimulus | AbstractCardiacCellInterface | protected |
| mpOdeSolver | AbstractCardiacCellInterface | protected |
| mpSystemInfo | AbstractUntemplatedParameterisedSystem | protected |
| mSetVoltageDerivativeToZero | AbstractCardiacCellInterface | protected |
| mStateVariables | AbstractParameterisedSystem< std::vector< double > > | protected |
| mUseAnalyticJacobian | AbstractOdeSystem | protected |
| mVoltageIndex | AbstractCardiacCellInterface | protected |
| ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | virtual |
| rGetConstStateVariables() const | AbstractOdeSystem | |
| rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariableNames() const | AbstractCardiacCell | virtual |
| rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
| save(Archive &archive, const unsigned int version) const | AbstractOdeSystem | inlineprivate |
| serialize(Archive &archive, const unsigned int version) | FakeBathCell | inlineprivate |
| SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
| SetFixedVoltage(double voltage) | AbstractCardiacCellInterface | |
| SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
| SetParameter(const std::string &rParameterName, double value) | AbstractCardiacCell | virtual |
| AbstractOdeSystem::SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetSlowValues(const std::vector< double > &rSlowValues) | AbstractCardiacCell | virtual |
| SetSolver(boost::shared_ptr< AbstractIvpOdeSolver > pSolver) | AbstractCardiacCellInterface | |
| SetState(CellModelState state) | AbstractCardiacCell | virtual |
| SetStateVariable(unsigned index, double newValue) | AbstractCardiacCell | virtual |
| SetStateVariable(const std::string &rName, double newValue) | AbstractCardiacCell | virtual |
| SetStateVariables(const std::vector< double > &rVariables) | AbstractCardiacCell | virtual |
| AbstractOdeSystem::SetStateVariables(const std::vector< double > &rStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
| SetStretch(double stretch) | AbstractCardiacCellInterface | inlinevirtual |
| SetTimestep(double dt) | AbstractCardiacCell | virtual |
| SetUsedInTissueSimulation(bool tissue=true) | AbstractCardiacCellInterface | |
| SetVoltage(double voltage) | AbstractCardiacCell | virtual |
| SetVoltageDerivativeToZero(bool clamp=true) | AbstractCardiacCellInterface | virtual |
| SolveAndUpdateState(double tStart, double tEnd) | AbstractCardiacCell | virtual |
| UseCellMLDefaultStimulus() | AbstractCardiacCellInterface | virtual |
| VerifyStateVariables() | AbstractParameterisedSystem< std::vector< double > > | inlinevirtual |
| ~AbstractCardiacCell() | AbstractCardiacCell | virtual |
| ~AbstractCardiacCellInterface() | AbstractCardiacCellInterface | virtual |
| ~AbstractOdeSystem() | AbstractOdeSystem | virtual |
| ~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | virtual |
| ~FakeBathCell() | FakeBathCell | |
1.9.8