AbstractContractionModel() | AbstractContractionModel | inline |
AbstractOdeBasedContractionModel(unsigned numStateVariables) | AbstractOdeBasedContractionModel | inline |
AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
CalculateCalciumTrop50() | NhsContractionModel | protected |
CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
CalculateStoppingEvent(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
CalculateT0(double z) | NhsContractionModel | protected |
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | protected |
ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | virtual |
ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | protected |
DumpState(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | protected |
DumpState(const std::string &rMessage, std::vector< double > Y, double time) | AbstractParameterisedSystem< std::vector< double > > | protected |
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | NhsContractionModel | virtual |
GetActiveTension() | NhsContractionModel | virtual |
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetCalciumTroponinValue() | NhsContractionModel | |
GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
GetNextActiveTension() | NhsContractionModel | inlinevirtual |
GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfParameters() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfStateVariables() const | AbstractUntemplatedParameterisedSystem | |
GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetStateMessage(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | private |
GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
GetUseAnalyticJacobian() | AbstractOdeSystem | |
HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
IsStretchDependent() | NhsContractionModel | inlinevirtual |
IsStretchRateDependent() | NhsContractionModel | inlinevirtual |
load(Archive &archive, const unsigned int version) | AbstractOdeSystem | inlineprivate |
mA | NhsContractionModel | protectedstatic |
mA1 | NhsContractionModel | protectedstatic |
mA2 | NhsContractionModel | protectedstatic |
mA3 | NhsContractionModel | protectedstatic |
mAlpha0 | NhsContractionModel | protectedstatic |
mAlpha1 | NhsContractionModel | protectedstatic |
mAlpha2 | NhsContractionModel | protectedstatic |
mAlpha3 | NhsContractionModel | protectedstatic |
mAlphaR1 | NhsContractionModel | protectedstatic |
mAlphaR2 | NhsContractionModel | protectedstatic |
mBeta0 | NhsContractionModel | protectedstatic |
mBeta1 | NhsContractionModel | protectedstatic |
mCalcium50ref | NhsContractionModel | protectedstatic |
mCalciumI | NhsContractionModel | protected |
mCalciumTrop50 | NhsContractionModel | protected |
mCalciumTroponinMax | NhsContractionModel | protectedstatic |
mDLambdaDt | NhsContractionModel | protected |
mGamma | NhsContractionModel | protectedstatic |
mK1 | NhsContractionModel | protected |
mK2 | NhsContractionModel | protected |
mKon | NhsContractionModel | protectedstatic |
mKrefoff | NhsContractionModel | protectedstatic |
mKZ | NhsContractionModel | protectedstatic |
mLambda | NhsContractionModel | protected |
mN | NhsContractionModel | protectedstatic |
mNr | NhsContractionModel | protectedstatic |
mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | protected |
mParameters | AbstractParameterisedSystem< std::vector< double > > | protected |
mpSystemInfo | AbstractUntemplatedParameterisedSystem | protected |
mStateVariables | AbstractParameterisedSystem< std::vector< double > > | protected |
mTemporaryStateVariables | AbstractOdeBasedContractionModel | protected |
mTime | AbstractOdeBasedContractionModel | protected |
mTref | NhsContractionModel | protectedstatic |
mUseAnalyticJacobian | AbstractOdeSystem | protected |
mZp | NhsContractionModel | protectedstatic |
NhsContractionModel() | NhsContractionModel | |
ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | virtual |
rGetConstStateVariables() const | AbstractOdeSystem | |
rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetStateVariableNames() const | AbstractUntemplatedParameterisedSystem | |
rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
RunAndUpdate(double startTime, double endTime, double timeStep) | AbstractOdeBasedContractionModel | inlinevirtual |
RunDoNotUpdate(double startTime, double endTime, double timeStep) | AbstractOdeBasedContractionModel | inlinevirtual |
save(Archive &archive, const unsigned int version) const | AbstractOdeSystem | inlineprivate |
SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
SetInputParameters(ContractionModelInputParameters &rInputParameters) | NhsContractionModel | virtual |
SetIntracellularCalciumConcentration(double calciumConcentration) | NhsContractionModel | |
SetParameter(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetStateVariable(unsigned index, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
SetStateVariable(const std::string &rName, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
SetStateVariables(const std::vector< double > &rStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
SetStretch(double stretch) | AbstractContractionModel | inline |
SetStretchAndStretchRate(double lambda, double dlambdaDt) | NhsContractionModel | virtual |
TestContractionModels (defined in NhsContractionModel) | NhsContractionModel | friend |
UpdateStateVariables() | AbstractOdeBasedContractionModel | inlinevirtual |
VerifyStateVariables() | AbstractParameterisedSystem< std::vector< double > > | inlinevirtual |
~AbstractContractionModel() | AbstractContractionModel | inlinevirtual |
~AbstractOdeSystem() | AbstractOdeSystem | virtual |
~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | virtual |