Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
NhsContractionModel Member List

This is the complete list of members for NhsContractionModel, including all inherited members.

AbstractContractionModel()AbstractContractionModelinline
AbstractOdeBasedContractionModel(unsigned numStateVariables)AbstractOdeBasedContractionModelinline
AbstractOdeSystem(unsigned numberOfStateVariables)AbstractOdeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< std::vector< double > >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
CalculateCalciumTrop50()NhsContractionModelprotected
CalculateRootFunction(double time, const std::vector< double > &rY)AbstractOdeSystemvirtual
CalculateStoppingEvent(double time, const std::vector< double > &rY)AbstractOdeSystemvirtual
CalculateT0(double z)NhsContractionModelprotected
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)AbstractParameterisedSystem< std::vector< double > >protected
ComputeDerivedQuantities(double time, const std::vector< double > &rState)AbstractParameterisedSystem< std::vector< double > >virtual
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< std::vector< double > >
DumpState(const std::string &rMessage)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double > Y)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double > Y, double time)AbstractParameterisedSystem< std::vector< double > >protected
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)NhsContractionModelvirtual
GetActiveTension()NhsContractionModelvirtual
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetCalciumTroponinValue()NhsContractionModel
GetDerivedQuantityIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetInitialConditions() constAbstractParameterisedSystem< std::vector< double > >
GetNextActiveTension()NhsContractionModelinlinevirtual
GetNumberOfAttributes() constAbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() constAbstractUntemplatedParameterisedSystem
GetNumberOfParameters() constAbstractUntemplatedParameterisedSystem
GetNumberOfStateVariables() constAbstractUntemplatedParameterisedSystem
GetParameter(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetParameter(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetParameterIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetStateMessage(const std::string &rMessage, std::vector< double > Y)AbstractParameterisedSystem< std::vector< double > >private
GetStateVariable(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariableIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< std::vector< double > >
GetStateVariableUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetSystemInformation() constAbstractUntemplatedParameterisedSystem
GetSystemName() constAbstractUntemplatedParameterisedSystem
GetUseAnalyticJacobian()AbstractOdeSystem
HasAnyVariable(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasDerivedQuantity(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) constAbstractUntemplatedParameterisedSystem
IsStretchDependent()NhsContractionModelinlinevirtual
IsStretchRateDependent()NhsContractionModelinlinevirtual
load(Archive &archive, const unsigned int version)AbstractOdeSysteminlineprivate
mANhsContractionModelprotectedstatic
mA1NhsContractionModelprotectedstatic
mA2NhsContractionModelprotectedstatic
mA3NhsContractionModelprotectedstatic
mAlpha0NhsContractionModelprotectedstatic
mAlpha1NhsContractionModelprotectedstatic
mAlpha2NhsContractionModelprotectedstatic
mAlpha3NhsContractionModelprotectedstatic
mAlphaR1NhsContractionModelprotectedstatic
mAlphaR2NhsContractionModelprotectedstatic
mBeta0NhsContractionModelprotectedstatic
mBeta1NhsContractionModelprotectedstatic
mCalcium50refNhsContractionModelprotectedstatic
mCalciumINhsContractionModelprotected
mCalciumTrop50NhsContractionModelprotected
mCalciumTroponinMaxNhsContractionModelprotectedstatic
mDLambdaDtNhsContractionModelprotected
mGammaNhsContractionModelprotectedstatic
mK1NhsContractionModelprotected
mK2NhsContractionModelprotected
mKonNhsContractionModelprotectedstatic
mKrefoffNhsContractionModelprotectedstatic
mKZNhsContractionModelprotectedstatic
mLambdaNhsContractionModelprotected
mNNhsContractionModelprotectedstatic
mNrNhsContractionModelprotectedstatic
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystemprotected
mParametersAbstractParameterisedSystem< std::vector< double > >protected
mpSystemInfoAbstractUntemplatedParameterisedSystemprotected
mStateVariablesAbstractParameterisedSystem< std::vector< double > >protected
mTemporaryStateVariablesAbstractOdeBasedContractionModelprotected
mTimeAbstractOdeBasedContractionModelprotected
mTrefNhsContractionModelprotectedstatic
mUseAnalyticJacobianAbstractOdeSystemprotected
mZpNhsContractionModelprotectedstatic
NhsContractionModel()NhsContractionModel
ResetToInitialConditions()AbstractParameterisedSystem< std::vector< double > >virtual
rGetConstStateVariables() constAbstractOdeSystem
rGetDerivedQuantityNames() constAbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() constAbstractUntemplatedParameterisedSystem
rGetParameterNames() constAbstractUntemplatedParameterisedSystem
rGetParameterUnits() constAbstractUntemplatedParameterisedSystem
rGetStateVariableNames() constAbstractUntemplatedParameterisedSystem
rGetStateVariables()AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableUnits() constAbstractUntemplatedParameterisedSystem
RunAndUpdate(double startTime, double endTime, double timeStep)AbstractOdeBasedContractionModelinlinevirtual
RunDoNotUpdate(double startTime, double endTime, double timeStep)AbstractOdeBasedContractionModelinlinevirtual
save(Archive &archive, const unsigned int version) constAbstractOdeSysteminlineprivate
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions)AbstractParameterisedSystem< std::vector< double > >
SetInputParameters(ContractionModelInputParameters &rInputParameters)NhsContractionModelvirtual
SetIntracellularCalciumConcentration(double calciumConcentration)NhsContractionModel
SetParameter(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetParameter(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(unsigned index, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(const std::string &rName, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariables(const std::vector< double > &rStateVariables)AbstractParameterisedSystem< std::vector< double > >
SetStretch(double stretch)AbstractContractionModelinline
SetStretchAndStretchRate(double lambda, double dlambdaDt)NhsContractionModelvirtual
TestContractionModels (defined in NhsContractionModel)NhsContractionModelfriend
UpdateStateVariables()AbstractOdeBasedContractionModelinlinevirtual
VerifyStateVariables()AbstractParameterisedSystem< std::vector< double > >inlinevirtual
~AbstractContractionModel()AbstractContractionModelinlinevirtual
~AbstractOdeSystem()AbstractOdeSystemvirtual
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystemvirtual