| AbstractContractionModel() | AbstractContractionModel | inline |
| AbstractOdeBasedContractionModel(unsigned numStateVariables) | AbstractOdeBasedContractionModel | inline |
| AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
| AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
| CalculateBackwardEulerResidual(double calciumTroponin, double z, double Q, double &residualComponent1, double &residualComponent2) | NhsModelWithBackwardSolver | private |
| CalculateCalciumTrop50() | NhsContractionModel | protected |
| CalculateCaTropAndZDerivatives(double calciumTroponin, double z, double Q, double &dCaTrop, double &dz) | NhsModelWithBackwardSolver | private |
| CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
| CalculateStoppingEvent(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
| CalculateT0(double z) | NhsContractionModel | protected |
| CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | protected |
| ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | virtual |
| ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
| DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | protected |
| DumpState(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | protected |
| DumpState(const std::string &rMessage, std::vector< double > Y, double time) | AbstractParameterisedSystem< std::vector< double > > | protected |
| EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | NhsContractionModel | virtual |
| GetActiveTension() | NhsContractionModel | virtual |
| GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetCalciumTroponinValue() | NhsContractionModel | |
| GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetNextActiveTension() | NhsModelWithBackwardSolver | virtual |
| GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfParameters() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfStateVariables() const | AbstractUntemplatedParameterisedSystem | |
| GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetStateMessage(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | private |
| GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
| GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
| GetUseAnalyticJacobian() | AbstractOdeSystem | |
| HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| ImplicitSolveForQ() | NhsModelWithBackwardSolver | private |
| IsStretchDependent() | NhsContractionModel | inlinevirtual |
| IsStretchRateDependent() | NhsContractionModel | inlinevirtual |
| load(Archive &archive, const unsigned int version) | AbstractOdeSystem | inlineprivate |
| mA | NhsContractionModel | protectedstatic |
| mA1 | NhsContractionModel | protectedstatic |
| mA2 | NhsContractionModel | protectedstatic |
| mA3 | NhsContractionModel | protectedstatic |
| mAlpha0 | NhsContractionModel | protectedstatic |
| mAlpha1 | NhsContractionModel | protectedstatic |
| mAlpha2 | NhsContractionModel | protectedstatic |
| mAlpha3 | NhsContractionModel | protectedstatic |
| mAlphaR1 | NhsContractionModel | protectedstatic |
| mAlphaR2 | NhsContractionModel | protectedstatic |
| mBeta0 | NhsContractionModel | protectedstatic |
| mBeta1 | NhsContractionModel | protectedstatic |
| mCalcium50ref | NhsContractionModel | protectedstatic |
| mCalciumI | NhsContractionModel | protected |
| mCalciumTrop50 | NhsContractionModel | protected |
| mCalciumTroponinMax | NhsContractionModel | protectedstatic |
| mDLambdaDt | NhsContractionModel | protected |
| mDt | NhsModelWithBackwardSolver | private |
| mGamma | NhsContractionModel | protectedstatic |
| mK1 | NhsContractionModel | protected |
| mK2 | NhsContractionModel | protected |
| mKon | NhsContractionModel | protectedstatic |
| mKrefoff | NhsContractionModel | protectedstatic |
| mKZ | NhsContractionModel | protectedstatic |
| mLambda | NhsContractionModel | protected |
| mN | NhsContractionModel | protectedstatic |
| mNr | NhsContractionModel | protectedstatic |
| mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | protected |
| mParameters | AbstractParameterisedSystem< std::vector< double > > | protected |
| mpSystemInfo | AbstractUntemplatedParameterisedSystem | protected |
| mStateVariables | AbstractParameterisedSystem< std::vector< double > > | protected |
| mTemporaryStateVariables | AbstractOdeBasedContractionModel | protected |
| mTime | AbstractOdeBasedContractionModel | protected |
| mTolerance | NhsModelWithBackwardSolver | privatestatic |
| mTref | NhsContractionModel | protectedstatic |
| mUseAnalyticJacobian | AbstractOdeSystem | protected |
| mZp | NhsContractionModel | protectedstatic |
| NhsContractionModel() | NhsContractionModel | |
| NhsModelWithBackwardSolver() | NhsModelWithBackwardSolver | |
| ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | virtual |
| rGetConstStateVariables() const | AbstractOdeSystem | |
| rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariableNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
| RunAndUpdate(double startTime, double endTime, double timestep) | NhsModelWithBackwardSolver | virtual |
| RunDoNotUpdate(double startTime, double endTime, double timestep) | NhsModelWithBackwardSolver | virtual |
| save(Archive &archive, const unsigned int version) const | AbstractOdeSystem | inlineprivate |
| SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
| SetInputParameters(ContractionModelInputParameters &rInputParameters) | NhsContractionModel | virtual |
| SetIntracellularCalciumConcentration(double calciumConcentration) | NhsContractionModel | |
| SetParameter(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariable(unsigned index, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariable(const std::string &rName, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariables(const std::vector< double > &rStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStretch(double stretch) | AbstractContractionModel | inline |
| SetStretchAndStretchRate(double lambda, double dlambdaDt) | NhsContractionModel | virtual |
| UpdateStateVariables() | AbstractOdeBasedContractionModel | inlinevirtual |
| VerifyStateVariables() | AbstractParameterisedSystem< std::vector< double > > | inlinevirtual |
| ~AbstractContractionModel() | AbstractContractionModel | inlinevirtual |
| ~AbstractOdeSystem() | AbstractOdeSystem | virtual |
| ~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | virtual |
1.9.8