AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
AbstractTetrahedralMesh() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
AddElement(Element< ELEMENT_DIM, SPACE_DIM > *pNewElement) | MutableMesh< 2, 2 > | |
AddNode(Node< 2 > *pNewNode) | Toroidal2dMesh | |
MutableMesh< 2, 2 >::AddNode(Node< SPACE_DIM > *pNewNode) | MutableMesh< 2, 2 > | virtual |
boost::serialization::access | Toroidal2dMesh | friend |
BoundaryElementIterator typedef | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
BoundaryNodeIterator typedef | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
CalculateBoundingBox(const std::vector< Node< SPACE_DIM > * > &rNodes) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
CalculateBoundingBox() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
CalculateDesignatedOwnershipOfBoundaryElement(unsigned faceIndex) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
CalculateDesignatedOwnershipOfElement(unsigned elementIndex) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
CalculateMaximumContainingElementsPerProcess() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
CalculateMaximumNodeConnectivityPerProcess() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
CalculateMinMaxEdgeLengths() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
CalculateNodeExchange(std::vector< std::vector< unsigned > > &rNodesToSendPerProcess, std::vector< std::vector< unsigned > > &rNodesToReceivePerProcess) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
CheckIsConforming() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
CheckIsVoronoi(Element< ELEMENT_DIM, SPACE_DIM > *pElement, double maxPenetration) | MutableMesh< 2, 2 > | private |
CheckIsVoronoi(double maxPenetration=0.0) | MutableMesh< 2, 2 > | |
CheckOutwardNormals() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
Clear() | MutableMesh< 2, 2 > | virtual |
ConstructCuboid(unsigned width, unsigned height, unsigned depth) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
ConstructFromMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rOtherMesh) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
ConstructFromMeshReader(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
ConstructLinearMesh(unsigned width) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
ConstructRectangularMesh(unsigned width, unsigned height, bool stagger=true) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
ConstructRegularSlabMesh(double spaceStep, double width, double height=0, double depth=0) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
ConstructRegularSlabMeshWithDimensionSplit(unsigned dimension, double spaceStep, double width, double height=0, double depth=0) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
CorrectCylindricalNonPeriodicMesh() | Toroidal2dMesh | private |
CorrectToroidalNonPeriodicMesh() | Toroidal2dMesh | private |
CreateMirrorNodes() | Toroidal2dMesh | private |
DeleteBoundaryNodeAt(unsigned index) | MutableMesh< 2, 2 > | |
DeleteElement(unsigned index) | MutableMesh< 2, 2 > | virtual |
DeleteNode(unsigned index) | MutableMesh< 2, 2 > | virtual |
DeleteNodePriorToReMesh(unsigned index) | MutableMesh< 2, 2 > | |
EdgesBegin() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
EdgesEnd() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
ExportToMesher(NodeMap &map, MESHER_IO &mesherInput, int *elementList=nullptr) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
FreeTriangulateIo(triangulateio &mesherIo) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
GenerateVectorsOfElementsStraddlingCylindricalPeriodicBoundaries() | Toroidal2dMesh | private |
GenerateVectorsOfElementsStraddlingToroidalPeriodicBoundaries() | Toroidal2dMesh | private |
GetAngleBetweenNodes(unsigned indexA, unsigned indexB) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetBoundaryElement(unsigned index) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetBoundaryElementIteratorBegin() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetBoundaryElementIteratorEnd() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetBoundaryNodeIteratorBegin() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetBoundaryNodeIteratorEnd() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetContainingElementIndex(const ChastePoint< SPACE_DIM > &rTestPoint, bool strict=false, std::set< unsigned > testElements=std::set< unsigned >(), bool onlyTryWithTestElements=false) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetContainingElementIndexWithInitialGuess(const ChastePoint< SPACE_DIM > &rTestPoint, unsigned startingElementGuess, bool strict=false) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetContainingElementIndices(const ChastePoint< SPACE_DIM > &rTestPoint) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetCorrespondingCylindricalNodeIndex(unsigned nodeIndex) | Toroidal2dMesh | private |
GetCorrespondingToroidalNodeIndex(unsigned nodeIndex) | Toroidal2dMesh | private |
GetDistanceBetweenNodes(unsigned indexA, unsigned indexB) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetDistributedVectorFactory() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetElement(unsigned index) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetElementIteratorBegin(bool skipDeletedElements=true) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inline |
GetElementIteratorEnd() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inline |
GetHaloNodeIndices(std::vector< unsigned > &rHaloIndices) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetInstanceOfMismatchedBoundaryNodes() | Toroidal2dMesh | |
GetInverseJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian, double &rJacobianDeterminant, c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, SPACE_DIM > &rJacobian, double &rJacobianDeterminant) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetMaximumNodeIndex() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetMeshFileBaseName() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNearestElementIndex(const ChastePoint< SPACE_DIM > &rTestPoint) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNearestElementIndexFromTestElements(const ChastePoint< SPACE_DIM > &rTestPoint, std::set< unsigned > testElements) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNearestNodeIndex(const ChastePoint< SPACE_DIM > &rTestPoint) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetNode(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNodeFromPrePermutationIndex(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNodeIteratorBegin(bool skipDeletedNodes=true) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | inline |
GetNodeIteratorEnd() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | inline |
GetNodeOrHaloNode(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetNumAllBoundaryElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNumAllElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNumAllNodes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetNumBoundaryElements() const | MutableMesh< 2, 2 > | virtual |
GetNumBoundaryNodes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNumCableElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetNumElements() const | MutableMesh< 2, 2 > | virtual |
GetNumLocalBoundaryElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetNumLocalElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetNumNodeAttributes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNumNodes() const | MutableMesh< 2, 2 > | virtual |
GetNumVertices() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetSurfaceArea() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetVectorFromAtoB(const c_vector< double, 2 > &rLocation1, const c_vector< double, 2 > &rLocation2) | Toroidal2dMesh | |
MutableMesh< 2, 2 >::GetVectorFromAtoB(const c_vector< double, SPACE_DIM > &rLocationA, const c_vector< double, SPACE_DIM > &rLocationB) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetVolume() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetWeightedDirectionForBoundaryElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetWeightedDirectionForElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetWidth(const unsigned &rDimension) const | Toroidal2dMesh | virtual |
ImportFromMesher(MESHER_IO &mesherOutput, unsigned numberOfElements, int *elementList, unsigned numberOfFaces, int *faceList, int *edgeMarkerList) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
InitialiseTriangulateIo(triangulateio &mesherIo) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
IsMeshChanging() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
IsMeshOnDisk() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
load(Archive &archive, const unsigned int version) | MutableMesh< 2, 2 > | inlineprivate |
mAddedNodes | MutableMesh< 2, 2 > | protected |
mBottomImages | Toroidal2dMesh | private |
mBottomOriginals | Toroidal2dMesh | private |
mBottomPeriodicBoundaryElementIndices | Toroidal2dMesh | private |
mBoundaryElementJacobianDeterminants | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mBoundaryElements | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mBoundaryElementWeightedDirections | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mBoundaryNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mDeletedBoundaryElementIndices | MutableMesh< 2, 2 > | protected |
mDeletedElementIndices | MutableMesh< 2, 2 > | protected |
mDeletedNodeIndices | MutableMesh< 2, 2 > | protected |
mElementInverseJacobians | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mElementJacobianDeterminants | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mElementJacobians | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mElements | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mElementWeightedDirections | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mHeight | Toroidal2dMesh | private |
mImageToBottomOriginalNodeMap | Toroidal2dMesh | private |
mImageToLeftOriginalNodeMap | Toroidal2dMesh | private |
mImageToRightOriginalNodeMap | Toroidal2dMesh | private |
mImageToTopOriginalNodeMap | Toroidal2dMesh | private |
mLeftImages | Toroidal2dMesh | private |
mLeftOriginals | Toroidal2dMesh | private |
mLeftPeriodicBoundaryElementIndices | Toroidal2dMesh | private |
mMeshChangesDuringSimulation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mMeshFileBaseName | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mMeshIsLinear | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mMismatchedBoundaryElements | Toroidal2dMesh | private |
mNodePermutation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
MoveMergeNode(unsigned index, unsigned targetIndex, bool concreteMove=true) | MutableMesh< 2, 2 > | |
mpDistributedVectorFactory | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mRightImages | Toroidal2dMesh | private |
mRightOriginals | Toroidal2dMesh | private |
mRightPeriodicBoundaryElementIndices | Toroidal2dMesh | private |
mTopImages | Toroidal2dMesh | private |
mTopOriginals | Toroidal2dMesh | private |
mTopPeriodicBoundaryElementIndices | Toroidal2dMesh | private |
MutableMesh() | MutableMesh< 2, 2 > | |
MutableMesh(std::vector< Node< SPACE_DIM > * > nodes) | MutableMesh< 2, 2 > | |
mWidth | Toroidal2dMesh | private |
PermuteNodes() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
PermuteNodes(const std::vector< unsigned > &perm) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
ReadNodesPerProcessorFile(const std::string &rNodesPerProcessorFile) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
ReconstructCylindricalMesh() | Toroidal2dMesh | private |
ReconstructToroidalMesh() | Toroidal2dMesh | private |
RefineElement(Element< ELEMENT_DIM, SPACE_DIM > *pElement, ChastePoint< SPACE_DIM > point) | MutableMesh< 2, 2 > | |
RefreshJacobianCachedData() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
RefreshMesh() | Toroidal2dMesh | virtual |
ReIndex(NodeMap &map) | MutableMesh< 2, 2 > | |
ReMesh(NodeMap &rMap) | Toroidal2dMesh | virtual |
MutableMesh< 2, 2 >::ReMesh() | MutableMesh< 2, 2 > | |
RescaleMeshFromBoundaryNode(ChastePoint< 1 > updatedPoint, unsigned boundaryNodeIndex) | MutableMesh< 2, 2 > | |
RescaleMeshFromBoundaryNode(ChastePoint< 1 > updatedPoint, unsigned boundaryNodeIndex) | MutableMesh< 2, 2 > | |
rGetNodePermutation() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
Rotate(c_matrix< double, SPACE_DIM, SPACE_DIM > rotationMatrix) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
Rotate(c_vector< double, 3 > axis, double angle) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
Rotate(double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
RotateX(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
RotateY(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
RotateZ(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
save(Archive &archive, const unsigned int version) const | MutableMesh< 2, 2 > | inlineprivate |
Scale(const double xFactor=1.0, const double yFactor=1.0, const double zFactor=1.0) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
serialize(Archive &archive, const unsigned int version) | Toroidal2dMesh | inlineprivate |
SetDistributedVectorFactory(DistributedVectorFactory *pFactory) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
SetElementOwnerships() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
SetMeshHasChangedSinceLoading() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
SetNode(unsigned index, ChastePoint< 2 > point, bool concreteMove) | Toroidal2dMesh | |
MutableMesh< 2, 2 >::SetNode(unsigned index, ChastePoint< SPACE_DIM > point, bool concreteMove=true) | MutableMesh< 2, 2 > | virtual |
SolveBoundaryElementMapping(unsigned index) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
SolveElementMapping(unsigned index) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
SolveNodeMapping(unsigned index) const | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protectedvirtual |
SplitEdge(Node< SPACE_DIM > *pNodeA, Node< SPACE_DIM > *pNodeB) | MutableMesh< 2, 2 > | |
SplitLongEdges(double cutoffLength) | MutableMesh< 2, 2 > | |
TestToroidal2dMesh (defined in Toroidal2dMesh) | Toroidal2dMesh | friend |
TetrahedralMesh() | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
Toroidal2dMesh(double width, double depth) | Toroidal2dMesh | |
Toroidal2dMesh(double width, double depth, std::vector< Node< 2 > * > nodes) | Toroidal2dMesh | |
Translate(const c_vector< double, SPACE_DIM > &rDisplacement) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
Translate(const double xMovement=0.0, const double yMovement=0.0, const double zMovement=0.0) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
~AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
~AbstractTetrahedralMesh() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
~MutableMesh() | MutableMesh< 2, 2 > | virtual |
~Toroidal2dMesh() | Toroidal2dMesh | |