Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
Toroidal2dMesh Member List

This is the complete list of members for Toroidal2dMesh, including all inherited members.

AbstractMesh()AbstractMesh< ELEMENT_DIM, SPACE_DIM >
AbstractTetrahedralMesh()AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
AddElement(Element< ELEMENT_DIM, SPACE_DIM > *pNewElement)MutableMesh< 2, 2 >
AddNode(Node< 2 > *pNewNode)Toroidal2dMesh
MutableMesh< 2, 2 >::AddNode(Node< SPACE_DIM > *pNewNode)MutableMesh< 2, 2 >virtual
boost::serialization::accessToroidal2dMeshfriend
BoundaryElementIterator typedefAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
BoundaryNodeIterator typedefAbstractMesh< ELEMENT_DIM, SPACE_DIM >
CalculateBoundingBox(const std::vector< Node< SPACE_DIM > * > &rNodes) constAbstractMesh< ELEMENT_DIM, SPACE_DIM >protected
CalculateBoundingBox() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
CalculateDesignatedOwnershipOfBoundaryElement(unsigned faceIndex)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
CalculateDesignatedOwnershipOfElement(unsigned elementIndex)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
CalculateMaximumContainingElementsPerProcess() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
CalculateMaximumNodeConnectivityPerProcess() constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
CalculateMinMaxEdgeLengths()AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
CalculateNodeExchange(std::vector< std::vector< unsigned > > &rNodesToSendPerProcess, std::vector< std::vector< unsigned > > &rNodesToReceivePerProcess)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
CheckIsConforming()TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
CheckIsVoronoi(Element< ELEMENT_DIM, SPACE_DIM > *pElement, double maxPenetration)MutableMesh< 2, 2 >private
CheckIsVoronoi(double maxPenetration=0.0)MutableMesh< 2, 2 >
CheckOutwardNormals()AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
Clear()MutableMesh< 2, 2 >virtual
ConstructCuboid(unsigned width, unsigned height, unsigned depth)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
ConstructFromMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rOtherMesh)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
ConstructFromMeshReader(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
ConstructLinearMesh(unsigned width)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
ConstructRectangularMesh(unsigned width, unsigned height, bool stagger=true)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
ConstructRegularSlabMesh(double spaceStep, double width, double height=0, double depth=0)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
ConstructRegularSlabMeshWithDimensionSplit(unsigned dimension, double spaceStep, double width, double height=0, double depth=0)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
CorrectCylindricalNonPeriodicMesh()Toroidal2dMeshprivate
CorrectToroidalNonPeriodicMesh()Toroidal2dMeshprivate
CreateMirrorNodes()Toroidal2dMeshprivate
DeleteBoundaryNodeAt(unsigned index)MutableMesh< 2, 2 >
DeleteElement(unsigned index)MutableMesh< 2, 2 >virtual
DeleteNode(unsigned index)MutableMesh< 2, 2 >virtual
DeleteNodePriorToReMesh(unsigned index)MutableMesh< 2, 2 >
EdgesBegin()TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
EdgesEnd()TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
ExportToMesher(NodeMap &map, MESHER_IO &mesherInput, int *elementList=nullptr)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
FreeTriangulateIo(triangulateio &mesherIo)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
GenerateVectorsOfElementsStraddlingCylindricalPeriodicBoundaries()Toroidal2dMeshprivate
GenerateVectorsOfElementsStraddlingToroidalPeriodicBoundaries()Toroidal2dMeshprivate
GetAngleBetweenNodes(unsigned indexA, unsigned indexB)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetBoundaryElement(unsigned index) constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetBoundaryElementIteratorBegin() constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetBoundaryElementIteratorEnd() constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetBoundaryNodeIteratorBegin() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
GetBoundaryNodeIteratorEnd() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
GetContainingElementIndex(const ChastePoint< SPACE_DIM > &rTestPoint, bool strict=false, std::set< unsigned > testElements=std::set< unsigned >(), bool onlyTryWithTestElements=false)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetContainingElementIndexWithInitialGuess(const ChastePoint< SPACE_DIM > &rTestPoint, unsigned startingElementGuess, bool strict=false)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetContainingElementIndices(const ChastePoint< SPACE_DIM > &rTestPoint)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetCorrespondingCylindricalNodeIndex(unsigned nodeIndex)Toroidal2dMeshprivate
GetCorrespondingToroidalNodeIndex(unsigned nodeIndex)Toroidal2dMeshprivate
GetDistanceBetweenNodes(unsigned indexA, unsigned indexB)AbstractMesh< ELEMENT_DIM, SPACE_DIM >
GetDistributedVectorFactory()AbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetElement(unsigned index) constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetElementIteratorBegin(bool skipDeletedElements=true)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >inline
GetElementIteratorEnd()AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >inline
GetHaloNodeIndices(std::vector< unsigned > &rHaloIndices) constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetInstanceOfMismatchedBoundaryNodes()Toroidal2dMesh
GetInverseJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian, double &rJacobianDeterminant, c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian) constTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, SPACE_DIM > &rJacobian, double &rJacobianDeterminant) constTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetMaximumNodeIndex()AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetMeshFileBaseName() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
GetNearestElementIndex(const ChastePoint< SPACE_DIM > &rTestPoint)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetNearestElementIndexFromTestElements(const ChastePoint< SPACE_DIM > &rTestPoint, std::set< unsigned > testElements)AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetNearestNodeIndex(const ChastePoint< SPACE_DIM > &rTestPoint)AbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetNode(unsigned index) constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
GetNodeFromPrePermutationIndex(unsigned index) constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
GetNodeIteratorBegin(bool skipDeletedNodes=true)AbstractMesh< ELEMENT_DIM, SPACE_DIM >inline
GetNodeIteratorEnd()AbstractMesh< ELEMENT_DIM, SPACE_DIM >inline
GetNodeOrHaloNode(unsigned index) constAbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetNumAllBoundaryElements() constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetNumAllElements() constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetNumAllNodes() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetNumBoundaryElements() constMutableMesh< 2, 2 >virtual
GetNumBoundaryNodes() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
GetNumCableElements() constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetNumElements() constMutableMesh< 2, 2 >virtual
GetNumLocalBoundaryElements() constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetNumLocalElements() constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetNumNodeAttributes() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
GetNumNodes() constMutableMesh< 2, 2 >virtual
GetNumVertices() constAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetSurfaceArea()TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetVectorFromAtoB(const c_vector< double, 2 > &rLocation1, const c_vector< double, 2 > &rLocation2)Toroidal2dMesh
MutableMesh< 2, 2 >::GetVectorFromAtoB(const c_vector< double, SPACE_DIM > &rLocationA, const c_vector< double, SPACE_DIM > &rLocationB)AbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetVolume()TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
GetWeightedDirectionForBoundaryElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) constTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetWeightedDirectionForElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) constTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
GetWidth(const unsigned &rDimension) constToroidal2dMeshvirtual
ImportFromMesher(MESHER_IO &mesherOutput, unsigned numberOfElements, int *elementList, unsigned numberOfFaces, int *faceList, int *edgeMarkerList)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
InitialiseTriangulateIo(triangulateio &mesherIo)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
IsMeshChanging() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
IsMeshOnDisk() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
load(Archive &archive, const unsigned int version)MutableMesh< 2, 2 >inlineprivate
mAddedNodesMutableMesh< 2, 2 >protected
mBottomImagesToroidal2dMeshprivate
mBottomOriginalsToroidal2dMeshprivate
mBottomPeriodicBoundaryElementIndicesToroidal2dMeshprivate
mBoundaryElementJacobianDeterminantsTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
mBoundaryElementsAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
mBoundaryElementWeightedDirectionsTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
mBoundaryNodesAbstractMesh< ELEMENT_DIM, SPACE_DIM >protected
mDeletedBoundaryElementIndicesMutableMesh< 2, 2 >protected
mDeletedElementIndicesMutableMesh< 2, 2 >protected
mDeletedNodeIndicesMutableMesh< 2, 2 >protected
mElementInverseJacobiansTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
mElementJacobianDeterminantsTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
mElementJacobiansTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
mElementsAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
mElementWeightedDirectionsTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
mHeightToroidal2dMeshprivate
mImageToBottomOriginalNodeMapToroidal2dMeshprivate
mImageToLeftOriginalNodeMapToroidal2dMeshprivate
mImageToRightOriginalNodeMapToroidal2dMeshprivate
mImageToTopOriginalNodeMapToroidal2dMeshprivate
mLeftImagesToroidal2dMeshprivate
mLeftOriginalsToroidal2dMeshprivate
mLeftPeriodicBoundaryElementIndicesToroidal2dMeshprivate
mMeshChangesDuringSimulationAbstractMesh< ELEMENT_DIM, SPACE_DIM >protected
mMeshFileBaseNameAbstractMesh< ELEMENT_DIM, SPACE_DIM >protected
mMeshIsLinearAbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protected
mMismatchedBoundaryElementsToroidal2dMeshprivate
mNodePermutationAbstractMesh< ELEMENT_DIM, SPACE_DIM >protected
mNodesAbstractMesh< ELEMENT_DIM, SPACE_DIM >protected
MoveMergeNode(unsigned index, unsigned targetIndex, bool concreteMove=true)MutableMesh< 2, 2 >
mpDistributedVectorFactoryAbstractMesh< ELEMENT_DIM, SPACE_DIM >protected
mRightImagesToroidal2dMeshprivate
mRightOriginalsToroidal2dMeshprivate
mRightPeriodicBoundaryElementIndicesToroidal2dMeshprivate
mTopImagesToroidal2dMeshprivate
mTopOriginalsToroidal2dMeshprivate
mTopPeriodicBoundaryElementIndicesToroidal2dMeshprivate
MutableMesh()MutableMesh< 2, 2 >
MutableMesh(std::vector< Node< SPACE_DIM > * > nodes)MutableMesh< 2, 2 >
mWidthToroidal2dMeshprivate
PermuteNodes()TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
PermuteNodes(const std::vector< unsigned > &perm)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
ReadNodesPerProcessorFile(const std::string &rNodesPerProcessorFile)TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
ReconstructCylindricalMesh()Toroidal2dMeshprivate
ReconstructToroidalMesh()Toroidal2dMeshprivate
RefineElement(Element< ELEMENT_DIM, SPACE_DIM > *pElement, ChastePoint< SPACE_DIM > point)MutableMesh< 2, 2 >
RefreshJacobianCachedData()TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
RefreshMesh()Toroidal2dMeshvirtual
ReIndex(NodeMap &map)MutableMesh< 2, 2 >
ReMesh(NodeMap &rMap)Toroidal2dMeshvirtual
MutableMesh< 2, 2 >::ReMesh()MutableMesh< 2, 2 >
RescaleMeshFromBoundaryNode(ChastePoint< 1 > updatedPoint, unsigned boundaryNodeIndex)MutableMesh< 2, 2 >
RescaleMeshFromBoundaryNode(ChastePoint< 1 > updatedPoint, unsigned boundaryNodeIndex)MutableMesh< 2, 2 >
rGetNodePermutation() constAbstractMesh< ELEMENT_DIM, SPACE_DIM >
Rotate(c_matrix< double, SPACE_DIM, SPACE_DIM > rotationMatrix)AbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
Rotate(c_vector< double, 3 > axis, double angle)AbstractMesh< ELEMENT_DIM, SPACE_DIM >
Rotate(double theta)AbstractMesh< ELEMENT_DIM, SPACE_DIM >
RotateX(const double theta)AbstractMesh< ELEMENT_DIM, SPACE_DIM >
RotateY(const double theta)AbstractMesh< ELEMENT_DIM, SPACE_DIM >
RotateZ(const double theta)AbstractMesh< ELEMENT_DIM, SPACE_DIM >
save(Archive &archive, const unsigned int version) constMutableMesh< 2, 2 >inlineprivate
Scale(const double xFactor=1.0, const double yFactor=1.0, const double zFactor=1.0)AbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
serialize(Archive &archive, const unsigned int version)Toroidal2dMeshinlineprivate
SetDistributedVectorFactory(DistributedVectorFactory *pFactory)AbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
SetElementOwnerships()AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protectedvirtual
SetMeshHasChangedSinceLoading()AbstractMesh< ELEMENT_DIM, SPACE_DIM >
SetNode(unsigned index, ChastePoint< 2 > point, bool concreteMove)Toroidal2dMesh
MutableMesh< 2, 2 >::SetNode(unsigned index, ChastePoint< SPACE_DIM > point, bool concreteMove=true)MutableMesh< 2, 2 >virtual
SolveBoundaryElementMapping(unsigned index) constTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protectedvirtual
SolveElementMapping(unsigned index) constTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protectedvirtual
SolveNodeMapping(unsigned index) constTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >protectedvirtual
SplitEdge(Node< SPACE_DIM > *pNodeA, Node< SPACE_DIM > *pNodeB)MutableMesh< 2, 2 >
SplitLongEdges(double cutoffLength)MutableMesh< 2, 2 >
TestToroidal2dMesh (defined in Toroidal2dMesh)Toroidal2dMeshfriend
TetrahedralMesh()TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
Toroidal2dMesh(double width, double depth)Toroidal2dMesh
Toroidal2dMesh(double width, double depth, std::vector< Node< 2 > * > nodes)Toroidal2dMesh
Translate(const c_vector< double, SPACE_DIM > &rDisplacement)AbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
Translate(const double xMovement=0.0, const double yMovement=0.0, const double zMovement=0.0)AbstractMesh< ELEMENT_DIM, SPACE_DIM >
~AbstractMesh()AbstractMesh< ELEMENT_DIM, SPACE_DIM >virtual
~AbstractTetrahedralMesh()AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >virtual
~MutableMesh()MutableMesh< 2, 2 >virtual
~Toroidal2dMesh()Toroidal2dMesh