Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
TysonNovak2001OdeSystem Member List

This is the complete list of members for TysonNovak2001OdeSystem, including all inherited members.

AbstractOdeSystem(unsigned numberOfStateVariables)AbstractOdeSystem
AbstractOdeSystemWithAnalyticJacobian(unsigned numberOfStateVariables=0)AbstractOdeSystemWithAnalyticJacobianinline
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< std::vector< double > >
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables)AbstractUntemplatedParameterisedSystem
AnalyticJacobian(const std::vector< double > &rSolutionGuess, double **jacobian, double time, double timeStep)TysonNovak2001OdeSystemvirtual
boost::serialization::access (defined in TysonNovak2001OdeSystem)TysonNovak2001OdeSystemfriend
CalculateRootFunction(double time, const std::vector< double > &rY)TysonNovak2001OdeSystemvirtual
CalculateStoppingEvent(double time, const std::vector< double > &rY)TysonNovak2001OdeSystemvirtual
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames)AbstractParameterisedSystem< std::vector< double > >protected
ComputeDerivedQuantities(double time, const std::vector< double > &rState)AbstractParameterisedSystem< std::vector< double > >virtual
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< std::vector< double > >
DumpState(const std::string &rMessage)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double > Y)AbstractParameterisedSystem< std::vector< double > >protected
DumpState(const std::string &rMessage, std::vector< double > Y, double time)AbstractParameterisedSystem< std::vector< double > >protected
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)TysonNovak2001OdeSystemvirtual
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetAnyVariableUnits(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetAttribute(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetDerivedQuantityIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetDerivedQuantityUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetInitialConditions() constAbstractParameterisedSystem< std::vector< double > >
GetNumberOfAttributes() constAbstractUntemplatedParameterisedSystem
GetNumberOfDerivedQuantities() constAbstractUntemplatedParameterisedSystem
GetNumberOfParameters() constAbstractUntemplatedParameterisedSystem
GetNumberOfStateVariables() constAbstractUntemplatedParameterisedSystem
GetParameter(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetParameter(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetParameterIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetParameterUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetStateMessage(const std::string &rMessage, std::vector< double > Y)AbstractParameterisedSystem< std::vector< double > >private
GetStateVariable(unsigned index) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariable(const std::string &rName) constAbstractParameterisedSystem< std::vector< double > >
GetStateVariableIndex(const std::string &rName) constAbstractUntemplatedParameterisedSystem
GetStateVariables()AbstractParameterisedSystem< std::vector< double > >
GetStateVariableUnits(unsigned index) constAbstractUntemplatedParameterisedSystem
GetSystemInformation() constAbstractUntemplatedParameterisedSystem
GetSystemName() constAbstractUntemplatedParameterisedSystem
GetUseAnalyticJacobian()AbstractOdeSystem
HasAnyVariable(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasAttribute(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasDerivedQuantity(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasParameter(const std::string &rName) constAbstractUntemplatedParameterisedSystem
HasStateVariable(const std::string &rName) constAbstractUntemplatedParameterisedSystem
Init()TysonNovak2001OdeSystem
load(Archive &archive, const unsigned int version)AbstractOdeSysteminlineprivate
mCycB_thresholdTysonNovak2001OdeSystemprivate
mJ15TysonNovak2001OdeSystemprivate
mJ16TysonNovak2001OdeSystemprivate
mJ3TysonNovak2001OdeSystemprivate
mJ4TysonNovak2001OdeSystemprivate
mJ5TysonNovak2001OdeSystemprivate
mJ7TysonNovak2001OdeSystemprivate
mJ8TysonNovak2001OdeSystemprivate
mK1TysonNovak2001OdeSystemprivate
mK10TysonNovak2001OdeSystemprivate
mK11TysonNovak2001OdeSystemprivate
mK12dTysonNovak2001OdeSystemprivate
mK12ddTysonNovak2001OdeSystemprivate
mK12dddTysonNovak2001OdeSystemprivate
mK13TysonNovak2001OdeSystemprivate
mK14TysonNovak2001OdeSystemprivate
mK15dTysonNovak2001OdeSystemprivate
mK15ddTysonNovak2001OdeSystemprivate
mK16dTysonNovak2001OdeSystemprivate
mK16ddTysonNovak2001OdeSystemprivate
mK2dTysonNovak2001OdeSystemprivate
mK2ddTysonNovak2001OdeSystemprivate
mK2dddTysonNovak2001OdeSystemprivate
mK3dTysonNovak2001OdeSystemprivate
mK3ddTysonNovak2001OdeSystemprivate
mK4TysonNovak2001OdeSystemprivate
mK4dTysonNovak2001OdeSystemprivate
mK5dTysonNovak2001OdeSystemprivate
mK5ddTysonNovak2001OdeSystemprivate
mK6TysonNovak2001OdeSystemprivate
mK7TysonNovak2001OdeSystemprivate
mK8TysonNovak2001OdeSystemprivate
mK9TysonNovak2001OdeSystemprivate
mKeqTysonNovak2001OdeSystemprivate
mMadTysonNovak2001OdeSystemprivate
mMstarTysonNovak2001OdeSystemprivate
mMuTysonNovak2001OdeSystemprivate
mNTysonNovak2001OdeSystemprivate
mNumberOfStateVariablesAbstractUntemplatedParameterisedSystemprotected
mParametersAbstractParameterisedSystem< std::vector< double > >protected
mpSystemInfoAbstractUntemplatedParameterisedSystemprotected
mStateVariablesAbstractParameterisedSystem< std::vector< double > >protected
mUseAnalyticJacobianAbstractOdeSystemprotected
ResetToInitialConditions()AbstractParameterisedSystem< std::vector< double > >virtual
rGetConstStateVariables() constAbstractOdeSystem
rGetDerivedQuantityNames() constAbstractUntemplatedParameterisedSystem
rGetDerivedQuantityUnits() constAbstractUntemplatedParameterisedSystem
rGetParameterNames() constAbstractUntemplatedParameterisedSystem
rGetParameterUnits() constAbstractUntemplatedParameterisedSystem
rGetStateVariableNames() constAbstractUntemplatedParameterisedSystem
rGetStateVariables()AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableUnits() constAbstractUntemplatedParameterisedSystem
save(Archive &archive, const unsigned int version) constAbstractOdeSysteminlineprivate
serialize(Archive &archive, const unsigned int version)TysonNovak2001OdeSysteminlineprivate
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions)AbstractParameterisedSystem< std::vector< double > >
SetParameter(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetParameter(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(unsigned index, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(const std::string &rName, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariables(const std::vector< double > &rStateVariables)AbstractParameterisedSystem< std::vector< double > >
TysonNovak2001OdeSystem(std::vector< double > stateVariables=std::vector< double >())TysonNovak2001OdeSystem
VerifyStateVariables()AbstractParameterisedSystem< std::vector< double > >inlinevirtual
~AbstractOdeSystem()AbstractOdeSystemvirtual
~AbstractUntemplatedParameterisedSystem()AbstractUntemplatedParameterisedSystemvirtual
~TysonNovak2001OdeSystem()TysonNovak2001OdeSystem