AbstractCellCycleModel(const AbstractCellCycleModel &rModel) | AbstractCellCycleModel | protected |
AbstractCellCycleModel() | AbstractCellCycleModel | |
AbstractOdeBasedPhaseBasedCellCycleModel(const AbstractOdeBasedPhaseBasedCellCycleModel &rModel) | AbstractOdeBasedPhaseBasedCellCycleModel | protected |
AbstractOdeBasedPhaseBasedCellCycleModel(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | AbstractOdeBasedPhaseBasedCellCycleModel | |
AbstractPhaseBasedCellCycleModel(const AbstractPhaseBasedCellCycleModel &rModel) | AbstractPhaseBasedCellCycleModel | protected |
AbstractPhaseBasedCellCycleModel() | AbstractPhaseBasedCellCycleModel | |
AbstractVanLeeuwen2009WntSwatCellCycleModel(const AbstractVanLeeuwen2009WntSwatCellCycleModel &rModel) | AbstractVanLeeuwen2009WntSwatCellCycleModel | protected |
AbstractVanLeeuwen2009WntSwatCellCycleModel(boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | AbstractVanLeeuwen2009WntSwatCellCycleModel | |
AbstractWntOdeBasedCellCycleModel(const AbstractWntOdeBasedCellCycleModel &rModel) | AbstractWntOdeBasedCellCycleModel | protected |
AbstractWntOdeBasedCellCycleModel(boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | AbstractWntOdeBasedCellCycleModel | |
AdjustOdeParameters(double currentTime) | AbstractVanLeeuwen2009WntSwatCellCycleModel | privatevirtual |
boost::serialization::access (defined in VanLeeuwen2009WntSwatCellCycleModelHypothesisOne) | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne | friend |
CanCellTerminallyDifferentiate() | AbstractWntOdeBasedCellCycleModel | virtual |
CellCycleModelOdeHandler(const CellCycleModelOdeHandler &rHandler) | CellCycleModelOdeHandler | protected |
CellCycleModelOdeHandler(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | CellCycleModelOdeHandler | |
ChangeCellProliferativeTypeDueToCurrentBetaCateninLevel() | AbstractVanLeeuwen2009WntSwatCellCycleModel | privatevirtual |
CreateCellCycleModel() | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne | virtual |
GetAge() | AbstractCellCycleModel | |
GetAverageStemCellCycleTime() | AbstractWntOdeBasedCellCycleModel | virtual |
GetAverageTransitCellCycleTime() | AbstractWntOdeBasedCellCycleModel | virtual |
GetBirthTime() const | AbstractCellCycleModel | |
GetCell() | AbstractCellCycleModel | |
GetCurrentCellCyclePhase() const | AbstractPhaseBasedCellCycleModel | |
GetCytoplasmicBetaCateninLevel() | AbstractVanLeeuwen2009WntSwatCellCycleModel | |
GetDimension() const | AbstractCellCycleModel | |
GetDt() | CellCycleModelOdeHandler | |
GetG1Duration() const | AbstractPhaseBasedCellCycleModel | virtual |
GetG2Duration() const | AbstractPhaseBasedCellCycleModel | virtual |
GetIdentifier() const | Identifiable | |
GetMDuration() const | AbstractPhaseBasedCellCycleModel | virtual |
GetMembraneBoundBetaCateninLevel() | AbstractVanLeeuwen2009WntSwatCellCycleModel | |
GetMinimumGapDuration() const | AbstractPhaseBasedCellCycleModel | |
GetNuclearBetaCateninLevel() | AbstractVanLeeuwen2009WntSwatCellCycleModel | |
GetOdeSolver() const | CellCycleModelOdeHandler | |
GetOdeStopTime() | AbstractOdeBasedPhaseBasedCellCycleModel | |
GetOdeSystem() const | CellCycleModelOdeHandler | |
GetProteinConcentrations() const | CellCycleModelOdeHandler | |
GetSDuration() const | AbstractPhaseBasedCellCycleModel | virtual |
GetSG2MDuration() const | AbstractPhaseBasedCellCycleModel | |
GetStemCellG1Duration() const | AbstractPhaseBasedCellCycleModel | |
GetTransitCellG1Duration() const | AbstractPhaseBasedCellCycleModel | |
GetWntLevel() const | AbstractWntOdeBasedCellCycleModel | protected |
Initialise() | AbstractVanLeeuwen2009WntSwatCellCycleModel | virtual |
InitialiseDaughterCell() | AbstractCellCycleModel | virtual |
InitialiseOdeSystem(double wntConcentration, boost::shared_ptr< AbstractCellMutationState > pMutationState) | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne | virtual |
mBirthTime | AbstractCellCycleModel | protected |
mCurrentCellCyclePhase | AbstractPhaseBasedCellCycleModel | protected |
mDimension | AbstractCellCycleModel | protected |
mDivideTime | AbstractOdeBasedPhaseBasedCellCycleModel | protected |
mDt | CellCycleModelOdeHandler | protected |
mFinishedRunningOdes | CellCycleModelOdeHandler | protected |
mG1Duration | AbstractPhaseBasedCellCycleModel | protected |
mG2Duration | AbstractPhaseBasedCellCycleModel | protected |
mG2PhaseStartTime | AbstractOdeBasedPhaseBasedCellCycleModel | protected |
mLastTime | CellCycleModelOdeHandler | protected |
mMDuration | AbstractPhaseBasedCellCycleModel | protected |
mMinimumGapDuration | AbstractPhaseBasedCellCycleModel | protected |
mpCell | AbstractCellCycleModel | protected |
mpOdeSolver | CellCycleModelOdeHandler | protected |
mpOdeSystem | CellCycleModelOdeHandler | protected |
mReadyToDivide | AbstractCellCycleModel | protected |
mSDuration | AbstractPhaseBasedCellCycleModel | protected |
mStemCellG1Duration | AbstractPhaseBasedCellCycleModel | protected |
mTransitCellG1Duration | AbstractPhaseBasedCellCycleModel | protected |
AbstractPhaseBasedCellCycleModel::operator=(const AbstractCellCycleModel &) | AbstractCellCycleModel | private |
OutputCellCycleModelInfo(out_stream &rParamsFile) | AbstractCellCycleModel | |
OutputCellCycleModelParameters(out_stream &rParamsFile) | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne | virtual |
ReadyToDivide() | AbstractPhaseBasedCellCycleModel | virtual |
ResetForDivision() | AbstractWntOdeBasedCellCycleModel | virtual |
serialize(Archive &archive, const unsigned int version) | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne | inlineprivate |
SetBirthTime(double birthTime) | AbstractOdeBasedPhaseBasedCellCycleModel | virtual |
SetCell(CellPtr pCell) | AbstractCellCycleModel | |
SetDimension(unsigned dimension) | AbstractCellCycleModel | |
SetDt(double timeStep) | CellCycleModelOdeHandler | |
SetG2Duration(double g2Duration) | AbstractPhaseBasedCellCycleModel | |
SetLastTime(double lastTime) | CellCycleModelOdeHandler | |
SetMDuration(double mDuration) | AbstractPhaseBasedCellCycleModel | |
SetMinimumGapDuration(double minimumGapDuration) | AbstractPhaseBasedCellCycleModel | |
SetOdeSystem(AbstractOdeSystem *pOdeSystem) | CellCycleModelOdeHandler | |
SetProteinConcentrationsForTestsOnly(double lastTime, std::vector< double > proteinConcentrations) | CellCycleModelOdeHandler | |
SetSDuration(double sDuration) | AbstractPhaseBasedCellCycleModel | |
SetStateVariables(const std::vector< double > &rStateVariables) | CellCycleModelOdeHandler | |
SetStemCellG1Duration(double stemCellG1Duration) | AbstractPhaseBasedCellCycleModel | virtual |
SetTransitCellG1Duration(double transitCellG1Duration) | AbstractPhaseBasedCellCycleModel | virtual |
SolveOdeToTime(double currentTime) | CellCycleModelOdeHandler | protected |
TidyTemplatedExportIdentifier(std::string identifier) const | Identifiable | private |
UpdateCellCyclePhase() | AbstractWntOdeBasedCellCycleModel | protectedvirtual |
UpdateCellProliferativeType() | AbstractWntOdeBasedCellCycleModel | |
VanLeeuwen2009WntSwatCellCycleModelHypothesisOne(const VanLeeuwen2009WntSwatCellCycleModelHypothesisOne &rModel) | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne | protected |
VanLeeuwen2009WntSwatCellCycleModelHypothesisOne(boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne | |
~AbstractCellCycleModel() | AbstractCellCycleModel | virtual |
~AbstractOdeBasedPhaseBasedCellCycleModel() | AbstractOdeBasedPhaseBasedCellCycleModel | virtual |
~AbstractPhaseBasedCellCycleModel() | AbstractPhaseBasedCellCycleModel | virtual |
~AbstractWntOdeBasedCellCycleModel() | AbstractWntOdeBasedCellCycleModel | virtual |
~CellCycleModelOdeHandler() | CellCycleModelOdeHandler | virtual |
~Identifiable() | Identifiable | virtual |