BoundaryConditionsContainer.hpp

/*

Copyright (C) University of Oxford, 2005-2009

University of Oxford means the Chancellor, Masters and Scholars of the
University of Oxford, having an administrative office at Wellington
Square, Oxford OX1 2JD, UK.

This file is part of Chaste.

Chaste is free software: you can redistribute it and/or modify it
under the terms of the GNU Lesser General Public License as published
by the Free Software Foundation, either version 2.1 of the License, or
(at your option) any later version.

Chaste is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
License for more details. The offer of Chaste under the terms of the
License is subject to the License being interpreted in accordance with
English Law and subject to any action against the University of Oxford
being under the jurisdiction of the English Courts.

You should have received a copy of the GNU Lesser General Public License
along with Chaste. If not, see <http://www.gnu.org/licenses/>.

*/
#ifndef _BOUNDARYCONDITIONSCONTAINER_HPP_
#define _BOUNDARYCONDITIONSCONTAINER_HPP_

#include <map>

#include "AbstractBoundaryConditionsContainer.hpp"
#include "AbstractBoundaryCondition.hpp"
#include "AbstractTetrahedralMesh.hpp"
#include "BoundaryElement.hpp"
#include "Node.hpp"
#include "LinearSystem.hpp"
#include "PetscException.hpp"
#include "ChastePoint.hpp"
#include "ConstBoundaryCondition.hpp"
#include "DistributedVectorFactory.hpp"


template<unsigned ELEM_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
class BoundaryConditionsContainer : public AbstractBoundaryConditionsContainer<ELEM_DIM,SPACE_DIM,PROBLEM_DIM>
{
public:

    typedef typename std::map< const BoundaryElement<ELEM_DIM-1, SPACE_DIM>*, const AbstractBoundaryCondition<SPACE_DIM>* >::const_iterator
        NeumannMapIterator;

private:

    std::map< const BoundaryElement<ELEM_DIM-1, SPACE_DIM> *, const AbstractBoundaryCondition<SPACE_DIM>* >
        *mpNeumannMap[PROBLEM_DIM]; 
    NeumannMapIterator mLastNeumannCondition[PROBLEM_DIM];

    bool mAnyNonZeroNeumannConditionsForUnknown[PROBLEM_DIM];

    ConstBoundaryCondition<SPACE_DIM> *mpZeroBoundaryCondition;

public:

    BoundaryConditionsContainer();

    ~BoundaryConditionsContainer();

    void AddDirichletBoundaryCondition(const Node<SPACE_DIM>* pBoundaryNode,
                                       const AbstractBoundaryCondition<SPACE_DIM>* pBoundaryCondition,
                                       unsigned indexOfUnknown = 0,
                                       bool checkIfBoundaryNode = true);

    void AddNeumannBoundaryCondition(const BoundaryElement<ELEM_DIM-1, SPACE_DIM>* pBoundaryElement,
                                     const AbstractBoundaryCondition<SPACE_DIM>* pBoundaryCondition,
                                     unsigned indexOfUnknown = 0);

    void DefineZeroDirichletOnMeshBoundary(AbstractTetrahedralMesh<ELEM_DIM,SPACE_DIM>* pMesh,
                                           unsigned indexOfUnknown = 0);

    void DefineConstantDirichletOnMeshBoundary(AbstractTetrahedralMesh<ELEM_DIM,SPACE_DIM>* pMesh,
                                               double value,
                                               unsigned indexOfUnknown = 0);

    void DefineZeroNeumannOnMeshBoundary(AbstractTetrahedralMesh<ELEM_DIM,SPACE_DIM>* pMesh,
                                         unsigned indexOfUnknown = 0);

    void ApplyDirichletToLinearProblem(LinearSystem& rLinearSystem,
                                       bool applyToMatrix = true);

    void ApplyDirichletToNonlinearResidual(const Vec currentSolution, Vec residual,
                                           DistributedVectorFactory& rFactory);

    void ApplyDirichletToNonlinearJacobian(Mat jacobian);

    bool Validate(AbstractTetrahedralMesh<ELEM_DIM,SPACE_DIM>* pMesh);

    double GetNeumannBCValue(const BoundaryElement<ELEM_DIM-1,SPACE_DIM>* pSurfaceElement,
                             const ChastePoint<SPACE_DIM>& rX,
                             unsigned indexOfUnknown = 0);

    bool HasNeumannBoundaryCondition(const BoundaryElement<ELEM_DIM-1,SPACE_DIM>* pSurfaceElement,
                                     unsigned indexOfUnknown = 0);

    bool AnyNonZeroNeumannConditions();

    NeumannMapIterator BeginNeumann();

    NeumannMapIterator EndNeumann();
};


#endif //_BOUNDARYCONDITIONSCONTAINER_HPP_

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