, including all inherited members.
| boost::serialization::access class | HeartConfig | [friend] |
| CheckTimeSteps() const | HeartConfig | [private] |
| DecideLocation(TYPE *params_ptr, TYPE *defaults_ptr, const std::string &nameParameter) const | HeartConfig | [inline, private] |
| GetAbsoluteTolerance() const | HeartConfig | |
| GetApdMaps(std::vector< std::pair< double, double > > &apd_maps) const | HeartConfig | |
| GetBathConductivity() const | HeartConfig | |
| GetCapacitance() const | HeartConfig | |
| GetCellHeterogeneities(std::vector< ChasteCuboid > &cellHeterogeneityAreas, std::vector< double > &scaleFactorGks, std::vector< double > &scaleFactorIto, std::vector< double > &scaleFactorGkr) const | HeartConfig | |
| GetConductionVelocityMaps(std::vector< unsigned > &conduction_velocity_maps) const | HeartConfig | |
| GetConductivityHeterogeneities(std::vector< ChasteCuboid > &conductivitiesHeterogeneityAreas, std::vector< c_vector< double, 3 > > &intraConductivities, std::vector< c_vector< double, 3 > > &extraConductivities) const | HeartConfig | |
| GetConductivityHeterogeneitiesProvided() const | HeartConfig | |
| GetConductivityMedia() const | HeartConfig | |
| GetCreateFibre() const | HeartConfig | |
| GetCreateMesh() const | HeartConfig | |
| GetCreateSheet() const | HeartConfig | |
| GetCreateSlab() const | HeartConfig | |
| GetDefaultIonicModel() const | HeartConfig | |
| GetDomain() const | HeartConfig | |
| GetExtracellularConductivities(c_vector< double, 3 > &extraConductivities) const | HeartConfig | |
| GetExtracellularConductivities(c_vector< double, 2 > &extraConductivities) const | HeartConfig | |
| GetExtracellularConductivities(c_vector< double, 1 > &extraConductivities) const | HeartConfig | |
| GetFibreLength(c_vector< double, 1 > &fibreLength) const | HeartConfig | |
| GetInterNodeSpace() const | HeartConfig | |
| GetIntracellularConductivities(c_vector< double, 3 > &intraConductivities) const | HeartConfig | |
| GetIntracellularConductivities(c_vector< double, 2 > &intraConductivities) const | HeartConfig | |
| GetIntracellularConductivities(c_vector< double, 1 > &intraConductivities) const | HeartConfig | |
| GetIonicModelRegions(std::vector< ChasteCuboid > &definedRegions, std::vector< ionic_models_available_type > &ionicModels) const | HeartConfig | |
| GetKSPPreconditioner() const | HeartConfig | |
| GetKSPSolver() const | HeartConfig | |
| GetLoadMesh() const | HeartConfig | |
| GetMeshName() const | HeartConfig | |
| GetOdeTimeStep() const | HeartConfig | |
| GetOutputDirectory() const | HeartConfig | |
| GetOutputFilenamePrefix() const | HeartConfig | |
| GetPdeTimeStep() const | HeartConfig | |
| GetPrintingTimeStep() const | HeartConfig | |
| GetRelativeTolerance() const | HeartConfig | |
| GetSheetDimensions(c_vector< double, 2 > &sheetDimensions) const | HeartConfig | |
| GetSimulationDuration() const | HeartConfig | |
| GetSlabDimensions(c_vector< double, 3 > &slabDimensions) const | HeartConfig | |
| GetSpaceDimension() const | HeartConfig | |
| GetStimuli(std::vector< boost::shared_ptr< SimpleStimulus > > &rStimuliApplied, std::vector< ChasteCuboid > &rStimulatedAreas) const | HeartConfig | |
| GetSurfaceAreaToVolumeRatio() const | HeartConfig | |
| GetUpstrokeTimeMaps(std::vector< double > &upstroke_time_maps) const | HeartConfig | |
| GetUseAbsoluteTolerance() const | HeartConfig | |
| GetUseRelativeTolerance() const | HeartConfig | |
| HeartConfig() (defined in HeartConfig) | HeartConfig | [private] |
| Instance() | HeartConfig | [static] |
| IsApdMapsRequested() const | HeartConfig | |
| IsConductionVelocityMapsRequested() const | HeartConfig | |
| IsMaxUpstrokeVelocityMapRequested() const | HeartConfig | |
| IsMeshProvided() const | HeartConfig | |
| IsPostProcessingRequested() const | HeartConfig | |
| IsUpstrokeTimeMapsRequested() const | HeartConfig | |
| load(Archive &archive, const unsigned int version) | HeartConfig | [inline, private] |
| mpDefaultParameters | HeartConfig | [private] |
| mpInstance | HeartConfig | [private, static] |
| mpUserParameters | HeartConfig | [private] |
| mUseFixedSchemaLocation | HeartConfig | [private] |
| ReadFile(const std::string &rFileName) | HeartConfig | [private] |
| Reset() | HeartConfig | [static] |
| save(Archive &archive, const unsigned int version) const | HeartConfig | [inline, private] |
| SetApdMaps(const std::vector< std::pair< double, double > > &apd_maps) | HeartConfig | |
| SetBathConductivity(double bathConductivity) | HeartConfig | |
| SetCapacitance(double capacitance) | HeartConfig | |
| SetConductivityHeterogeneities(std::vector< c_vector< double, 3 > > &cornerA, std::vector< c_vector< double, 3 > > &cornerB, std::vector< c_vector< double, 3 > > &intraConductivities, std::vector< c_vector< double, 3 > > &extraConductivities) | HeartConfig | |
| SetDefaultIonicModel(ionic_models_available_type ionicModel) | HeartConfig | |
| SetDefaultsFile(const std::string &rFileName) | HeartConfig | |
| SetDomain(domain_type domain) | HeartConfig | |
| SetExtracellularConductivities(const c_vector< double, 3 > &extraConductivities) | HeartConfig | |
| SetExtracellularConductivities(const c_vector< double, 2 > &extraConductivities) | HeartConfig | |
| SetExtracellularConductivities(const c_vector< double, 1 > &extraConductivities) | HeartConfig | |
| SetFibreLength(double x, double inter_node_space) | HeartConfig | |
| SetIntracellularConductivities(const c_vector< double, 3 > &intraConductivities) | HeartConfig | |
| SetIntracellularConductivities(const c_vector< double, 2 > &intraConductivities) | HeartConfig | |
| SetIntracellularConductivities(const c_vector< double, 1 > &intraConductivities) | HeartConfig | |
| SetKSPPreconditioner(const char *kspPreconditioner) | HeartConfig | |
| SetKSPSolver(const char *kspSolver) | HeartConfig | |
| SetMeshFileName(std::string meshPrefix, media_type fibreDefinition=media_type::NoFibreOrientation) | HeartConfig | |
| SetOdePdeAndPrintingTimeSteps(double odeTimeStep, double pdeTimeStep, double printingTimeStep) | HeartConfig | |
| SetOdeTimeStep(double odeTimeStep) | HeartConfig | |
| SetOutputDirectory(const std::string &rOutputDirectory) | HeartConfig | |
| SetOutputFilenamePrefix(const std::string &rOutputFilenamePrefix) | HeartConfig | |
| SetParametersFile(const std::string &rFileName) | HeartConfig | |
| SetPdeTimeStep(double pdeTimeStep) | HeartConfig | |
| SetPrintingTimeStep(double printingTimeStep) | HeartConfig | |
| SetSheetDimensions(double x, double y, double inter_node_space) | HeartConfig | |
| SetSimulationDuration(double simulationDuration) | HeartConfig | |
| SetSlabDimensions(double x, double y, double z, double inter_node_space) | HeartConfig | |
| SetSpaceDimension(unsigned spaceDimension) | HeartConfig | |
| SetSurfaceAreaToVolumeRatio(double ratio) | HeartConfig | |
| SetUpstrokeTimeMaps(std::vector< double > &upstroke_time_maps) | HeartConfig | |
| SetUseAbsoluteTolerance(double absoluteTolerance) | HeartConfig | |
| SetUseFixedSchemaLocation(bool useFixedSchemaLocation) | HeartConfig | |
| SetUseRelativeTolerance(double relativeTolerance) | HeartConfig | |
| TestHeartConfig (defined in HeartConfig) | HeartConfig | [friend] |
| Write(bool useArchiveLocationInfo=false) | HeartConfig | |
| ~HeartConfig() | HeartConfig | |
