SloughingCellKiller.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2009
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #ifndef SLOUGHINGCELLKILLER_HPP_
00029 #define SLOUGHINGCELLKILLER_HPP_
00030 
00031 #include "AbstractCellKiller.hpp"
00032 
00033 #include <boost/serialization/access.hpp>
00034 #include <boost/serialization/base_object.hpp>
00035 
00044 class SloughingCellKiller : public AbstractCellKiller<2>
00045 {
00046 private:
00047 
00049     bool mSloughSides;
00050 
00052     friend class boost::serialization::access;
00059     template<class Archive>
00060     void serialize(Archive & archive, const unsigned int version)
00061     {
00062         archive & boost::serialization::base_object<AbstractCellKiller<2> >(*this);
00063         //archive & mSloughSides; // done in load_construct_data
00064         
00065         // Make sure Cancer Parameters are archived
00066         CancerParameters* p_params = CancerParameters::Instance();
00067         archive & *p_params;
00068         archive & p_params;
00069     }
00070 
00071 public:
00072 
00079     SloughingCellKiller(AbstractTissue<2>* pCrypt, bool sloughSides=false);
00080 
00084     bool GetSloughSides() const;
00085 
00089     virtual void TestAndLabelCellsForApoptosisOrDeath();
00090 
00091 };
00092 
00093 #include <boost/serialization/export.hpp>
00094 
00095 BOOST_CLASS_EXPORT(SloughingCellKiller)
00096 
00097 namespace boost
00098 {
00099 namespace serialization
00100 {
00104 template<class Archive>
00105 inline void save_construct_data(
00106     Archive & ar, const SloughingCellKiller * t, const BOOST_PFTO unsigned int file_version)
00107 {
00108     // Save data required to construct instance
00109     const AbstractTissue<2>* const p_crypt = t->GetTissue();
00110     ar << p_crypt;
00111     bool slough_sides = t->GetSloughSides();
00112     ar << slough_sides;
00113 }
00114 
00118 template<class Archive>
00119 inline void load_construct_data(
00120     Archive & ar, SloughingCellKiller * t, const unsigned int file_version)
00121 {
00122     // Retrieve data from archive required to construct new instance
00123     AbstractTissue<2>* p_crypt;
00124     ar >> p_crypt;
00125     bool slough_sides;
00126     ar >> slough_sides;
00127 
00128     // Invoke inplace constructor to initialise instance
00129     ::new(t)SloughingCellKiller(p_crypt, slough_sides);
00130 }
00131 }
00132 } // namespace ...
00133 
00134 #endif /*SLOUGHINGCELLKILLER_HPP_*/

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