AbstractCellCentreBasedTissue< DIM > Member List

This is the complete list of members for AbstractCellCentreBasedTissue< DIM >, including all inherited members.

AbstractCellCentreBasedTissue(const std::vector< TissueCell > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCellCentreBasedTissue< DIM > [inline]
AbstractCellCentreBasedTissue()AbstractCellCentreBasedTissue< DIM > [inline]
AbstractTissue(const std::vector< TissueCell > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractTissue< DIM > [inline]
AbstractTissue()AbstractTissue< DIM > [inline]
AddCell(TissueCell &rNewCell, c_vector< double, DIM > newLocation, TissueCell *pParentCell=NULL)AbstractCellCentreBasedTissue< DIM > [inline, virtual]
AddNode(Node< DIM > *pNewNode)=0AbstractTissue< DIM > [pure virtual]
Begin()AbstractTissue< DIM > [inline]
boost::serialization::access classAbstractCellCentreBasedTissue< DIM > [friend]
CloseOutputFiles(bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors)AbstractTissue< DIM > [inline, virtual]
CreateOutputFiles(const std::string &rDirectory, bool rCleanOutputDirectory, bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors)AbstractTissue< DIM > [inline, virtual]
End()AbstractTissue< DIM > [inline]
GenerateCellResults(unsigned locationIndex, bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors, std::vector< unsigned > &rCellTypeCounter, std::vector< unsigned > &rCellMutationStateCounter, std::vector< unsigned > &rCellCyclePhaseCounter)AbstractTissue< DIM > [inline]
GetCellAncestors()AbstractTissue< DIM > [inline]
GetCellCyclePhaseCount()AbstractTissue< DIM > [inline]
GetCellMutationStateCount()AbstractTissue< DIM > [inline]
GetCellTypeCount()AbstractTissue< DIM > [inline]
GetDampingConstant(unsigned nodeIndex)AbstractCellCentreBasedTissue< DIM > [inline, virtual]
GetLocationIndexUsingCell(TissueCell *pCell)AbstractTissue< DIM > [inline]
GetLocationOfCellCentre(TissueCell *pCell)AbstractCellCentreBasedTissue< DIM > [inline, virtual]
GetNode(unsigned index)=0AbstractTissue< DIM > [pure virtual]
GetNodeCorrespondingToCell(TissueCell *pCell)AbstractCellCentreBasedTissue< DIM > [inline]
GetNumNodes()=0AbstractTissue< DIM > [pure virtual]
GetNumRealCells()AbstractTissue< DIM > [inline]
HasMesh()AbstractTissue< DIM > [inline]
InitialiseCells()AbstractTissue< DIM > [inline]
IsCellAssociatedWithADeletedNode(TissueCell &rCell)AbstractCellCentreBasedTissue< DIM > [inline, virtual]
IsGhostNode(unsigned index)AbstractTissue< DIM > [inline, virtual]
mCellCyclePhaseCountAbstractTissue< DIM > [protected]
mCellLocationMapAbstractTissue< DIM > [protected]
mCellMutationStateCountAbstractTissue< DIM > [protected]
mCellsAbstractTissue< DIM > [protected]
mCellTypeCountAbstractTissue< DIM > [protected]
mLocationCellMapAbstractTissue< DIM > [protected]
mpCellAncestorsFileAbstractTissue< DIM > [protected]
mpCellCyclePhasesFileAbstractTissue< DIM > [protected]
mpCellMutationStatesFileAbstractTissue< DIM > [protected]
mpCellTypesFileAbstractTissue< DIM > [protected]
mpCellVariablesFileAbstractTissue< DIM > [protected]
mpVizCellTypesFileAbstractTissue< DIM > [protected]
mpVizNodesFileAbstractTissue< DIM > [protected]
mTissueContainsMeshAbstractTissue< DIM > [protected]
RemoveDeadCells()=0AbstractTissue< DIM > [pure virtual]
rGetCells()AbstractTissue< DIM > [inline]
rGetCellUsingLocationIndex(unsigned index)AbstractTissue< DIM > [inline]
serialize(Archive &archive, const unsigned int version)AbstractCellCentreBasedTissue< DIM > [inline, private]
SetCellAncestorsToNodeIndices()AbstractTissue< DIM > [inline]
SetNode(unsigned nodeIndex, ChastePoint< DIM > &rNewLocation)=0AbstractTissue< DIM > [pure virtual]
Update()=0AbstractTissue< DIM > [pure virtual]
UpdateNodeLocations(const std::vector< c_vector< double, DIM > > &rNodeForces, double dt)AbstractCellCentreBasedTissue< DIM > [inline, virtual]
Validate()=0AbstractTissue< DIM > [protected, pure virtual]
WriteCellResultsToFiles(bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors, std::vector< unsigned > &rCellTypeCounter, std::vector< unsigned > &rCellMutationStateCounter, std::vector< unsigned > &rCellCyclePhaseCounter)AbstractTissue< DIM > [inline]
WriteMeshToFile(const std::string &rArchiveDirectory, const std::string &rMeshFileName)AbstractTissue< DIM > [inline, virtual]
WriteResultsToFiles(bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors)AbstractCellCentreBasedTissue< DIM > [inline, virtual]
WriteTimeAndNodeResultsToFiles(bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors, std::vector< unsigned > &rCellTypeCounter, std::vector< unsigned > &rCellMutationStateCounter, std::vector< unsigned > &rCellCyclePhaseCounter)AbstractTissue< DIM > [inline]
~AbstractTissue()AbstractTissue< DIM > [inline, virtual]


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