, including all inherited members.
| AbstractCellCentreBasedTissue(const std::vector< TissueCell > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellCentreBasedTissue< DIM > | [inline] |
| AbstractCellCentreBasedTissue() | AbstractCellCentreBasedTissue< DIM > | [inline] |
| AbstractTissue(const std::vector< TissueCell > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractTissue< DIM > | [inline] |
| AbstractTissue() | AbstractTissue< DIM > | [inline] |
| AddCell(TissueCell &rNewCell, c_vector< double, DIM > newLocation, TissueCell *pParentCell=NULL) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| AddNode(Node< DIM > *pNewNode)=0 | AbstractTissue< DIM > | [pure virtual] |
| Begin() | AbstractTissue< DIM > | [inline] |
| boost::serialization::access class | AbstractCellCentreBasedTissue< DIM > | [friend] |
| CloseOutputFiles(bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors) | AbstractTissue< DIM > | [inline, virtual] |
| CreateOutputFiles(const std::string &rDirectory, bool rCleanOutputDirectory, bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors) | AbstractTissue< DIM > | [inline, virtual] |
| End() | AbstractTissue< DIM > | [inline] |
| GenerateCellResults(unsigned locationIndex, bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors, std::vector< unsigned > &rCellTypeCounter, std::vector< unsigned > &rCellMutationStateCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractTissue< DIM > | [inline] |
| GetCellAncestors() | AbstractTissue< DIM > | [inline] |
| GetCellCyclePhaseCount() | AbstractTissue< DIM > | [inline] |
| GetCellMutationStateCount() | AbstractTissue< DIM > | [inline] |
| GetCellTypeCount() | AbstractTissue< DIM > | [inline] |
| GetDampingConstant(unsigned nodeIndex) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| GetLocationIndexUsingCell(TissueCell *pCell) | AbstractTissue< DIM > | [inline] |
| GetLocationOfCellCentre(TissueCell *pCell) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| GetNode(unsigned index)=0 | AbstractTissue< DIM > | [pure virtual] |
| GetNodeCorrespondingToCell(TissueCell *pCell) | AbstractCellCentreBasedTissue< DIM > | [inline] |
| GetNumNodes()=0 | AbstractTissue< DIM > | [pure virtual] |
| GetNumRealCells() | AbstractTissue< DIM > | [inline] |
| HasMesh() | AbstractTissue< DIM > | [inline] |
| InitialiseCells() | AbstractTissue< DIM > | [inline] |
| IsCellAssociatedWithADeletedNode(TissueCell &rCell) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| IsGhostNode(unsigned index) | AbstractTissue< DIM > | [inline, virtual] |
| mCellCyclePhaseCount | AbstractTissue< DIM > | [protected] |
| mCellLocationMap | AbstractTissue< DIM > | [protected] |
| mCellMutationStateCount | AbstractTissue< DIM > | [protected] |
| mCells | AbstractTissue< DIM > | [protected] |
| mCellTypeCount | AbstractTissue< DIM > | [protected] |
| mLocationCellMap | AbstractTissue< DIM > | [protected] |
| mpCellAncestorsFile | AbstractTissue< DIM > | [protected] |
| mpCellCyclePhasesFile | AbstractTissue< DIM > | [protected] |
| mpCellMutationStatesFile | AbstractTissue< DIM > | [protected] |
| mpCellTypesFile | AbstractTissue< DIM > | [protected] |
| mpCellVariablesFile | AbstractTissue< DIM > | [protected] |
| mpVizCellTypesFile | AbstractTissue< DIM > | [protected] |
| mpVizNodesFile | AbstractTissue< DIM > | [protected] |
| mTissueContainsMesh | AbstractTissue< DIM > | [protected] |
| RemoveDeadCells()=0 | AbstractTissue< DIM > | [pure virtual] |
| rGetCells() | AbstractTissue< DIM > | [inline] |
| rGetCellUsingLocationIndex(unsigned index) | AbstractTissue< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | AbstractCellCentreBasedTissue< DIM > | [inline, private] |
| SetCellAncestorsToNodeIndices() | AbstractTissue< DIM > | [inline] |
| SetNode(unsigned nodeIndex, ChastePoint< DIM > &rNewLocation)=0 | AbstractTissue< DIM > | [pure virtual] |
| Update()=0 | AbstractTissue< DIM > | [pure virtual] |
| UpdateNodeLocations(const std::vector< c_vector< double, DIM > > &rNodeForces, double dt) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| Validate()=0 | AbstractTissue< DIM > | [protected, pure virtual] |
| WriteCellResultsToFiles(bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors, std::vector< unsigned > &rCellTypeCounter, std::vector< unsigned > &rCellMutationStateCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractTissue< DIM > | [inline] |
| WriteMeshToFile(const std::string &rArchiveDirectory, const std::string &rMeshFileName) | AbstractTissue< DIM > | [inline, virtual] |
| WriteResultsToFiles(bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| WriteTimeAndNodeResultsToFiles(bool outputCellMutationStates, bool outputCellTypes, bool outputCellVariables, bool outputCellCyclePhases, bool outputCellAncestors, std::vector< unsigned > &rCellTypeCounter, std::vector< unsigned > &rCellMutationStateCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractTissue< DIM > | [inline] |
| ~AbstractTissue() | AbstractTissue< DIM > | [inline, virtual] |
