BidomainProblem< DIM > Member List

This is the complete list of members for BidomainProblem< DIM >, including all inherited members.

AbstractCardiacProblem(AbstractCardiacCellFactory< SPACE_DIM > *pCellFactory)AbstractCardiacProblem< DIM, 2 >
AnalyseMeshForBath()BidomainProblem< DIM > [inline, private]
BidomainProblem(AbstractCardiacCellFactory< DIM > *pCellFactory, bool hasBath=false)BidomainProblem< DIM > [inline]
CloseFilesAndPostProcess()AbstractCardiacProblem< DIM, 2 >
ConvertOutputToMeshalyzerFormat(bool call=true)AbstractCardiacProblem< DIM, 2 >
CreateAssembler()BidomainProblem< DIM > [inline, protected, virtual]
CreateCardiacPde()BidomainProblem< DIM > [inline, protected, virtual]
CreateInitialCondition()BidomainProblem< DIM > [inline, private, virtual]
DefineWriterColumns() (defined in BidomainProblem< DIM >)BidomainProblem< DIM > [inline, virtual]
GetBidomainPde()BidomainProblem< DIM > [inline]
GetDataReader() (defined in AbstractCardiacProblem< DIM, 2 >)AbstractCardiacProblem< DIM, 2 >
GetPde() (defined in AbstractCardiacProblem< DIM, 2 >)AbstractCardiacProblem< DIM, 2 >
GetSolution()AbstractCardiacProblem< DIM, 2 >
Initialise()AbstractCardiacProblem< DIM, 2 >
InitialiseWriter()AbstractCardiacProblem< DIM, 2 >
mAllocatedMemoryForMeshAbstractCardiacProblem< DIM, 2 > [protected]
mCallChaste2MeshalyzerAbstractCardiacProblem< DIM, 2 > [protected]
mExtracelluarColumnIdBidomainProblem< DIM > [private]
mFixedExtracellularPotentialNodes (defined in BidomainProblem< DIM >)BidomainProblem< DIM > [private]
mHasBathBidomainProblem< DIM > [private]
mMeshFilenameAbstractCardiacProblem< DIM, 2 > [protected]
mNodeColumnIdAbstractCardiacProblem< DIM, 2 > [protected]
mNodesPerProcessorFilenameAbstractCardiacProblem< DIM, 2 > [protected]
mNodesToOutputAbstractCardiacProblem< DIM, 2 > [protected]
mOutputDirectoryAbstractCardiacProblem< DIM, 2 > [protected]
mOutputFilenamePrefix (defined in AbstractCardiacProblem< DIM, 2 >)AbstractCardiacProblem< DIM, 2 > [protected]
mpAssemblerBidomainProblem< DIM > [private]
mpBidomainPde (defined in BidomainProblem< DIM >)BidomainProblem< DIM > [protected]
mpBoundaryConditionsContainerAbstractCardiacProblem< DIM, 2 > [protected]
mpCardiacPdeAbstractCardiacProblem< DIM, 2 > [protected]
mpCellFactoryAbstractCardiacProblem< DIM, 2 > [protected]
mpDefaultBoundaryConditionsContainerAbstractCardiacProblem< DIM, 2 > [protected]
mpElectrodesBidomainProblem< DIM > [private]
mpMeshAbstractCardiacProblem< DIM, 2 > [protected]
mPrintOutputAbstractCardiacProblem< DIM, 2 > [protected]
mpWriter (defined in AbstractCardiacProblem< DIM, 2 >)AbstractCardiacProblem< DIM, 2 >
mRowForAverageOfPhiZeroed (defined in BidomainProblem< DIM >)BidomainProblem< DIM > [private]
mSolutionAbstractCardiacProblem< DIM, 2 > [protected]
mTimeColumnIdAbstractCardiacProblem< DIM, 2 > [protected]
mUseMatrixBasedRhsAssemblyAbstractCardiacProblem< DIM, 2 > [protected]
mVoltageColumnIdAbstractCardiacProblem< DIM, 2 > [protected]
mWriteInfoAbstractCardiacProblem< DIM, 2 > [protected]
OnEndOfTimestep(double time)BidomainProblem< DIM > [inline, virtual]
PreSolveChecks()BidomainProblem< DIM > [inline, virtual]
PrintOutput(bool rPrintOutput)AbstractCardiacProblem< DIM, 2 >
rGetMesh() (defined in AbstractCardiacProblem< DIM, 2 >)AbstractCardiacProblem< DIM, 2 >
SetBoundaryConditionsContainer(BoundaryConditionsContainer< SPACE_DIM, SPACE_DIM, PROBLEM_DIM > *bcc)AbstractCardiacProblem< DIM, 2 >
SetElectrodes(Electrodes< DIM > &rElectrodes)BidomainProblem< DIM > [inline]
SetFixedExtracellularPotentialNodes(std::vector< unsigned > nodes)BidomainProblem< DIM > [inline]
SetMesh(AbstractMesh< SPACE_DIM, SPACE_DIM > *pMesh)AbstractCardiacProblem< DIM, 2 >
SetNodeForAverageOfPhiZeroed(unsigned node)BidomainProblem< DIM > [inline]
SetNodesPerProcessorFilename(const std::string &filename)AbstractCardiacProblem< DIM, 2 >
SetOutputNodes(std::vector< unsigned > &nodesToOutput)AbstractCardiacProblem< DIM, 2 >
SetWriteInfo(bool writeInfo=true)AbstractCardiacProblem< DIM, 2 >
Solve()AbstractCardiacProblem< DIM, 2 >
TestBidomainWithBathAssembler (defined in BidomainProblem< DIM >)BidomainProblem< DIM > [friend]
UseMatrixBasedRhsAssembly(bool usematrix=true)AbstractCardiacProblem< DIM, 2 >
WriteInfo(double time)BidomainProblem< DIM > [inline, virtual]
WriteOneStep(double time, Vec voltageVec) (defined in BidomainProblem< DIM >)BidomainProblem< DIM > [inline, virtual]
~AbstractCardiacProblem() (defined in AbstractCardiacProblem< DIM, 2 >)AbstractCardiacProblem< DIM, 2 > [virtual]


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