, including all inherited members.
| AddCellKiller(AbstractCellKiller< DIM > *pCellKiller) | TissueSimulation< 2 > | |
| AfterSolve() | CryptSimulation2d | [private, virtual] |
| ApplyTissueBoundaryConditions(const std::vector< c_vector< double, 2 > > &rOldLocations) | CryptSimulation2d | |
| TissueSimulation< 2 >::ApplyTissueBoundaryConditions(const std::vector< c_vector< double, DIM > > &rOldLocations) | TissueSimulation< 2 > | [inline, protected, virtual] |
| boost::serialization::access class | CryptSimulation2d | [friend] |
| CalculateDividingCellCentreLocations(TissueCell *pParentCell) | CryptSimulation2d | [private, virtual] |
| CryptSimulation2d(AbstractTissue< 2 > &rTissue, std::vector< AbstractForce< 2 > * > forceCollection, bool deleteTissueAndForceCollection=false, bool initialiseCells=true) | CryptSimulation2d | |
| DoCellBirth() | TissueSimulation< 2 > | [protected] |
| DoCellRemoval() | TissueSimulation< 2 > | [protected] |
| GetCellCyclePhaseCount() | TissueSimulation< 2 > | |
| GetCellMutationStateCount() | TissueSimulation< 2 > | |
| GetCellTypeCount() | TissueSimulation< 2 > | |
| GetDt() | TissueSimulation< 2 > | |
| GetNodeLocation(const unsigned &rNodeIndex) | TissueSimulation< 2 > | |
| GetNumBirths() | TissueSimulation< 2 > | |
| GetNumDeaths() | TissueSimulation< 2 > | |
| GetOutputDirectory() | TissueSimulation< 2 > | |
| mAllocatedMemoryForForceCollection | TissueSimulation< 2 > | [protected] |
| mBetaCatResultsFile | CryptSimulation2d | [private] |
| mCellKillers | TissueSimulation< 2 > | [protected] |
| mDeleteTissue | TissueSimulation< 2 > | [protected] |
| mDt | TissueSimulation< 2 > | [protected] |
| mEndTime | TissueSimulation< 2 > | [protected] |
| mForceCollection | TissueSimulation< 2 > | [protected] |
| mInitialiseCells | TissueSimulation< 2 > | [protected] |
| mNoBirth | TissueSimulation< 2 > | [protected] |
| mNumBirths | TissueSimulation< 2 > | [protected] |
| mNumDeaths | TissueSimulation< 2 > | [protected] |
| mOutputCellAncestors | TissueSimulation< 2 > | [protected] |
| mOutputCellCyclePhases | TissueSimulation< 2 > | [protected] |
| mOutputCellMutationStates | TissueSimulation< 2 > | [protected] |
| mOutputCellTypes | TissueSimulation< 2 > | [protected] |
| mOutputCellVariables | TissueSimulation< 2 > | [protected] |
| mOutputDirectory | TissueSimulation< 2 > | [protected] |
| mpParams | TissueSimulation< 2 > | [protected] |
| mpRandomGenerator | TissueSimulation< 2 > | [protected] |
| mpSetupFile | TissueSimulation< 2 > | [protected] |
| mpStaticCastTissue | CryptSimulation2d | [private] |
| mrTissue | TissueSimulation< 2 > | [protected] |
| mSamplingTimestepMultiple | TissueSimulation< 2 > | [protected] |
| mSimulationOutputDirectory | TissueSimulation< 2 > | [protected] |
| mUpdateTissue | TissueSimulation< 2 > | [protected] |
| mUseJiggledBottomCells | CryptSimulation2d | [private] |
| PostSolve() | CryptSimulation2d | [private, virtual] |
| rGetForceCollection() const | TissueSimulation< 2 > | |
| rGetTissue() | TissueSimulation< 2 > | |
| rGetTissue() const | TissueSimulation< 2 > | |
| serialize(Archive &archive, const unsigned int version) | CryptSimulation2d | [inline, private] |
| SetDt(double dt) | TissueSimulation< 2 > | |
| SetEndTime(double endTime) | TissueSimulation< 2 > | |
| SetNoBirth(bool noBirth) | TissueSimulation< 2 > | |
| SetOutputCellAncestors(bool outputCellAncestors) | TissueSimulation< 2 > | |
| SetOutputCellCyclePhases(bool outputCellCyclePhases) | TissueSimulation< 2 > | |
| SetOutputCellMutationStates(bool outputCellMutationStates) | TissueSimulation< 2 > | |
| SetOutputCellTypes(bool outputCellTypes) | TissueSimulation< 2 > | |
| SetOutputCellVariables(bool outputCellVariables) | TissueSimulation< 2 > | |
| SetOutputDirectory(std::string outputDirectory) | TissueSimulation< 2 > | |
| SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple) | TissueSimulation< 2 > | |
| SetUpdateTissueRule(bool updateTissue) | TissueSimulation< 2 > | |
| SetupSolve() | CryptSimulation2d | [private, virtual] |
| SetupWriteBetaCatenin() | CryptSimulation2d | [private] |
| Solve() | TissueSimulation< 2 > | |
| StoppingEventHasOccurred() | TissueSimulation< 2 > | [protected, virtual] |
| TestCryptSimulation2d (defined in CryptSimulation2d) | CryptSimulation2d | [friend] |
| TissueSimulation(AbstractTissue< DIM > &rTissue, std::vector< AbstractForce< DIM > * > forceCollection, bool deleteTissueAndForceCollection=false, bool initialiseCells=true) | TissueSimulation< 2 > | |
| UpdateNodePositions(const std::vector< c_vector< double, DIM > > &rNodeForces) | TissueSimulation< 2 > | [protected, virtual] |
| UseJiggledBottomCells() | CryptSimulation2d | |
| WriteBetaCatenin(double time) | CryptSimulation2d | [private] |
| WriteVisualizerSetupFile() | CryptSimulation2d | [private, virtual] |
| ~TissueSimulation() | TissueSimulation< 2 > | [virtual] |
