CryptSimulation2d Member List

This is the complete list of members for CryptSimulation2d, including all inherited members.

AddCellKiller(AbstractCellKiller< DIM > *pCellKiller)TissueSimulation< 2 >
AfterSolve()CryptSimulation2d [private, virtual]
ApplyTissueBoundaryConditions(const std::vector< c_vector< double, 2 > > &rOldLocations)CryptSimulation2d
TissueSimulation< 2 >::ApplyTissueBoundaryConditions(const std::vector< c_vector< double, DIM > > &rOldLocations)TissueSimulation< 2 > [inline, protected, virtual]
boost::serialization::access classCryptSimulation2d [friend]
CalculateDividingCellCentreLocations(TissueCell *pParentCell)CryptSimulation2d [private, virtual]
CryptSimulation2d(AbstractTissue< 2 > &rTissue, std::vector< AbstractForce< 2 > * > forceCollection, bool deleteTissueAndForceCollection=false, bool initialiseCells=true)CryptSimulation2d
DoCellBirth()TissueSimulation< 2 > [protected]
DoCellRemoval()TissueSimulation< 2 > [protected]
GetCellCyclePhaseCount()TissueSimulation< 2 >
GetCellMutationStateCount()TissueSimulation< 2 >
GetCellTypeCount()TissueSimulation< 2 >
GetDt()TissueSimulation< 2 >
GetNodeLocation(const unsigned &rNodeIndex)TissueSimulation< 2 >
GetNumBirths()TissueSimulation< 2 >
GetNumDeaths()TissueSimulation< 2 >
GetOutputDirectory()TissueSimulation< 2 >
mAllocatedMemoryForForceCollectionTissueSimulation< 2 > [protected]
mBetaCatResultsFileCryptSimulation2d [private]
mCellKillersTissueSimulation< 2 > [protected]
mDeleteTissueTissueSimulation< 2 > [protected]
mDtTissueSimulation< 2 > [protected]
mEndTimeTissueSimulation< 2 > [protected]
mForceCollectionTissueSimulation< 2 > [protected]
mInitialiseCellsTissueSimulation< 2 > [protected]
mNoBirthTissueSimulation< 2 > [protected]
mNumBirthsTissueSimulation< 2 > [protected]
mNumDeathsTissueSimulation< 2 > [protected]
mOutputCellAncestorsTissueSimulation< 2 > [protected]
mOutputCellCyclePhasesTissueSimulation< 2 > [protected]
mOutputCellMutationStatesTissueSimulation< 2 > [protected]
mOutputCellTypesTissueSimulation< 2 > [protected]
mOutputCellVariablesTissueSimulation< 2 > [protected]
mOutputDirectoryTissueSimulation< 2 > [protected]
mpParamsTissueSimulation< 2 > [protected]
mpRandomGeneratorTissueSimulation< 2 > [protected]
mpSetupFileTissueSimulation< 2 > [protected]
mpStaticCastTissueCryptSimulation2d [private]
mrTissueTissueSimulation< 2 > [protected]
mSamplingTimestepMultipleTissueSimulation< 2 > [protected]
mSimulationOutputDirectoryTissueSimulation< 2 > [protected]
mUpdateTissueTissueSimulation< 2 > [protected]
mUseJiggledBottomCellsCryptSimulation2d [private]
PostSolve()CryptSimulation2d [private, virtual]
rGetForceCollection() const TissueSimulation< 2 >
rGetTissue()TissueSimulation< 2 >
rGetTissue() const TissueSimulation< 2 >
serialize(Archive &archive, const unsigned int version)CryptSimulation2d [inline, private]
SetDt(double dt)TissueSimulation< 2 >
SetEndTime(double endTime)TissueSimulation< 2 >
SetNoBirth(bool noBirth)TissueSimulation< 2 >
SetOutputCellAncestors(bool outputCellAncestors)TissueSimulation< 2 >
SetOutputCellCyclePhases(bool outputCellCyclePhases)TissueSimulation< 2 >
SetOutputCellMutationStates(bool outputCellMutationStates)TissueSimulation< 2 >
SetOutputCellTypes(bool outputCellTypes)TissueSimulation< 2 >
SetOutputCellVariables(bool outputCellVariables)TissueSimulation< 2 >
SetOutputDirectory(std::string outputDirectory)TissueSimulation< 2 >
SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple)TissueSimulation< 2 >
SetUpdateTissueRule(bool updateTissue)TissueSimulation< 2 >
SetupSolve()CryptSimulation2d [private, virtual]
SetupWriteBetaCatenin()CryptSimulation2d [private]
Solve()TissueSimulation< 2 >
StoppingEventHasOccurred()TissueSimulation< 2 > [protected, virtual]
TestCryptSimulation2d (defined in CryptSimulation2d)CryptSimulation2d [friend]
TissueSimulation(AbstractTissue< DIM > &rTissue, std::vector< AbstractForce< DIM > * > forceCollection, bool deleteTissueAndForceCollection=false, bool initialiseCells=true)TissueSimulation< 2 >
UpdateNodePositions(const std::vector< c_vector< double, DIM > > &rNodeForces)TissueSimulation< 2 > [protected, virtual]
UseJiggledBottomCells()CryptSimulation2d
WriteBetaCatenin(double time)CryptSimulation2d [private]
WriteVisualizerSetupFile()CryptSimulation2d [private, virtual]
~TissueSimulation()TissueSimulation< 2 > [virtual]


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