, including all inherited members.
| AbstractMesh() (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| AddNode(Node< 2 > *pNewNode) | Cylindrical2dMesh | |
| AddNode(Node< SPACE_DIM > *pNewNode) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| boost::serialization::access class | Cylindrical2dMesh | [friend] |
| BoundaryElementIterator typedef (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| BoundaryNodeIterator typedef (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| CalculateBoundaryOfFlaggedRegion() (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| CalculateSurfaceArea() (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| CalculateVolume() (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| CheckVoronoi(double maxPenetration=0.0) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Clear() (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ConstructCuboid(unsigned width, unsigned height, unsigned depth, bool stagger=false) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ConstructFromMeshReader(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader, bool cullInternalFaces=false) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ConstructLinearMesh(unsigned width) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ConstructRectangularMesh(unsigned width, unsigned height, bool stagger=true) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| CorrectNonPeriodicMesh() | Cylindrical2dMesh | [private] |
| CreateHaloNodes() | Cylindrical2dMesh | [private] |
| CreateMirrorNodes() | Cylindrical2dMesh | [private] |
| Cylindrical2dMesh(double width) | Cylindrical2dMesh | |
| Cylindrical2dMesh(double width, std::vector< Node< 2 > * > nodes) | Cylindrical2dMesh | |
| DeleteBoundaryNodeAt(unsigned index) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| DeleteHaloNodes() | Cylindrical2dMesh | [private] |
| DeleteNode(unsigned index) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| DeleteNodePriorToReMesh(unsigned index) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| EdgesBegin() (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| EdgesEnd() (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ElementIterator typedef (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
| FlagElementsNotContainingNodes(std::set< unsigned > nodesList) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GenerateVectorsOfElementsStraddlingPeriodicBoundaries() | Cylindrical2dMesh | [private] |
| GetAngleBetweenNodes(unsigned indexA, unsigned indexB) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetBoundaryElement(unsigned index) const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetBoundaryElementIteratorBegin() const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetBoundaryElementIteratorEnd() const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetBoundaryNodeIteratorBegin() const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetBoundaryNodeIteratorEnd() const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetContainingElementIndex(ChastePoint< SPACE_DIM > testPoint, bool strict=false, std::set< unsigned > testElements=std::set< unsigned >()) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetContainingElementIndices(ChastePoint< SPACE_DIM > testPoint) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetCorrespondingNodeIndex(unsigned nodeIndex) | Cylindrical2dMesh | [private] |
| GetDistanceBetweenNodes(unsigned indexA, unsigned indexB) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetElement(unsigned index) const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetElementIteratorBegin() const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetElementIteratorEnd() const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetInverseJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, SPACE_DIM > &rJacobian, double &rJacobianDeterminant, c_matrix< double, SPACE_DIM, SPACE_DIM > &rInverseJacobian) const (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, SPACE_DIM > &rJacobian, double &rJacobianDeterminant) const (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetMeshFileBaseName() const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNearestElementIndex(ChastePoint< SPACE_DIM > testPoint) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNode(unsigned index) const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumAllBoundaryElements() (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumAllElements() (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumAllNodes() const (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumBoundaryElements() const (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumBoundaryNodes() (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumElements() const (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetNumNodes() const (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| GetVectorFromAtoB(const c_vector< double, 2 > &rLocation1, const c_vector< double, 2 > &rLocation2) | Cylindrical2dMesh | |
| GetVectorFromAtoB(const c_vector< double, SPACE_DIM > &rLocationA, const c_vector< double, SPACE_DIM > &rLocationB) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetWeightedDirectionForBoundaryElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetWeightedDirectionForElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| GetWidth(const unsigned &rDimension) const | Cylindrical2dMesh | |
| GetWidthExtremes(const unsigned &rDimension) const (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| IsThisIndexInList(const unsigned &rNodeIndex, const std::vector< unsigned > &rListOfNodes) | Cylindrical2dMesh | [private] |
| mAddedNodes (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mBottom | Cylindrical2dMesh | [private] |
| mBottomHaloNodes | Cylindrical2dMesh | [private] |
| mBoundaryElementJacobianDeterminants (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mBoundaryElements (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mBoundaryElementWeightedDirections (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mBoundaryNodes (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mDeletedBoundaryElementIndices (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mDeletedElementIndices (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mDeletedNodeIndices (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mElementInverseJacobians (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mElementJacobianDeterminants (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mElementJacobians (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mElements (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mElementWeightedDirections (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mImageToLeftOriginalNodeMap | Cylindrical2dMesh | [private] |
| mImageToRightOriginalNodeMap | Cylindrical2dMesh | [private] |
| mLeftImages | Cylindrical2dMesh | [private] |
| mLeftOriginals | Cylindrical2dMesh | [private] |
| mLeftPeriodicBoundaryElementIndices | Cylindrical2dMesh | [private] |
| mMeshFileBaseName (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mNodes (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mNodesPermutation (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mNodesPerProcessor (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [protected] |
| MoveMergeNode(unsigned index, unsigned targetIndex, bool concreteMove=true) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| mRightImages | Cylindrical2dMesh | [private] |
| mRightOriginals | Cylindrical2dMesh | [private] |
| mRightPeriodicBoundaryElementIndices | Cylindrical2dMesh | [private] |
| mTop | Cylindrical2dMesh | [private] |
| mTopHaloNodes | Cylindrical2dMesh | [private] |
| MutableMesh() (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| MutableMesh(std::vector< Node< SPACE_DIM > * > nodes) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| mWidth | Cylindrical2dMesh | [private] |
| PermuteNodes() (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| PermuteNodes(std::vector< unsigned > &perm) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| PermuteNodesWithMetisBinaries(unsigned numProcs) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ReadNodesPerProcessorFile(const std::string &nodesPerProcessorFile) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ReconstructCylindricalMesh() | Cylindrical2dMesh | [private] |
| RefineElement(Element< ELEMENT_DIM, SPACE_DIM > *pElement, ChastePoint< SPACE_DIM > Point) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RefreshJacobianCachedData() (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RefreshMesh(void) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ReIndex(NodeMap &map) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ReMesh(NodeMap &map) | Cylindrical2dMesh | |
| ReMesh() (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RescaleMeshFromBoundaryNode(ChastePoint< 1 > updatedPoint, unsigned boundaryNodeIndex) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | |
| RescaleMeshFromBoundaryNode(ChastePoint< 1 > updatedPoint, unsigned boundaryNodeIndex) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| rGetNodePermutation() (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| rGetNodesPerProcessor() (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Rotate(c_matrix< double, SPACE_DIM, SPACE_DIM > rotation_matrix) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Rotate(c_vector< double, 3 > axis, double angle) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Rotate(double theta) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RotateX(const double theta) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RotateY(const double theta) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| RotateZ(const double theta) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Scale(const double xFactor=1.0, const double yFactor=1.0, const double zFactor=1.0) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | Cylindrical2dMesh | [inline, private] |
| SetElementOwnerships(unsigned lo, unsigned hi) (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| SetNode(unsigned index, ChastePoint< 2 > point, bool concreteMove) | Cylindrical2dMesh | |
| SetNode(unsigned index, ChastePoint< SPACE_DIM > point, bool concreteMove=true) (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| TestCylindrical2dMesh (defined in Cylindrical2dMesh) | Cylindrical2dMesh | [friend] |
| TetrahedralMesh() (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| TetrahedralMesh(unsigned numElements) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
| Translate(c_vector< double, SPACE_DIM > displacement) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| Translate(const double xMovement=0.0, const double yMovement=0.0, const double zMovement=0.0) (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| UnflagAllElements() (defined in TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >) | TetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | [inline] |
| UpdateTopAndBottom() | Cylindrical2dMesh | [private] |
| UseTheseElementsToDecideMeshing(std::set< unsigned > mainSideElements) | Cylindrical2dMesh | [private] |
| ~AbstractMesh() (defined in AbstractMesh< ELEMENT_DIM, SPACE_DIM >) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| ~Cylindrical2dMesh() | Cylindrical2dMesh | [inline] |
| ~MutableMesh() (defined in MutableMesh< ELEMENT_DIM, SPACE_DIM >) | MutableMesh< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
