ImplicitCardiacMechanicsAssembler< DIM > Member List

This is the complete list of members for ImplicitCardiacMechanicsAssembler< DIM >, including all inherited members.

AbstractNonlinearElasticityAssembler(unsigned numDofs, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes) (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline]
AbstractNonlinearElasticityAssembler(unsigned numDofs, std::vector< AbstractIncompressibleMaterialLaw< DIM > * > &rMaterialLaws, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes) (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline]
ApplyBoundaryConditions(bool applyToMatrix) (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline, protected]
AssembleOnBoundaryElement(BoundaryElement< DIM-1, DIM > &rBoundaryElement, c_matrix< double, BOUNDARY_STENCIL_SIZE, BOUNDARY_STENCIL_SIZE > &rAelem, c_vector< double, BOUNDARY_STENCIL_SIZE > &rBelem, c_vector< double, DIM > &rTraction, bool assembleResidual, bool assembleJacobian)NonlinearElasticityAssembler< DIM > [inline, protected, virtual]
AssembleOnElement(Element< DIM, DIM > &rElement, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElem, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElemPrecond, c_vector< double, STENCIL_SIZE > &rBElem, bool assembleResidual, bool assembleJacobian)ImplicitCardiacMechanicsAssembler< DIM > [inline, private, virtual]
AssembleSystem(bool assembleResidual, bool assembleJacobian)NonlinearElasticityAssembler< DIM > [inline, protected]
BOUNDARY_STENCIL_SIZE (defined in NonlinearElasticityAssembler< DIM >)NonlinearElasticityAssembler< DIM > [protected, static]
CalculateResidualNorm() (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline, protected]
dTdE (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
FormInitialGuess()NonlinearElasticityAssembler< DIM > [inline, protected]
GetNumNewtonIterations() (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline]
GetQuadratureRule()ImplicitCardiacMechanicsAssembler< DIM > [inline]
GetTotalNumQuadPoints()ImplicitCardiacMechanicsAssembler< DIM > [inline]
ImplicitCardiacMechanicsAssembler(QuadraticMesh< DIM > *pQuadMesh, std::string outputDirectory, std::vector< unsigned > &rFixedNodes, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw=NULL)ImplicitCardiacMechanicsAssembler< DIM > [inline]
Initialise(std::vector< c_vector< double, DIM > > *pFixedNodeLocations) (defined in NonlinearElasticityAssembler< DIM >)NonlinearElasticityAssembler< DIM > [inline, protected]
mAllocatedMaterialLawMemoryImplicitCardiacMechanicsAssembler< DIM > [private]
MAX_NEWTON_ABS_TOL (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected, static]
mBodyForce (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mBoundaryElementsNonlinearElasticityAssembler< DIM > [protected]
mCellMechSystemsImplicitCardiacMechanicsAssembler< DIM > [private]
mCurrentSolution (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mCurrentTimeImplicitCardiacMechanicsAssembler< DIM > [private]
mDeformedPosition (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mDensity (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mFixedNodeDisplacements (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mFixedNodes (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
MIN_NEWTON_ABS_TOL (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected, static]
mLambdaImplicitCardiacMechanicsAssembler< DIM > [private]
mLambdaLastTimeStepImplicitCardiacMechanicsAssembler< DIM > [private]
mMaterialLaws (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mNextTimeImplicitCardiacMechanicsAssembler< DIM > [private]
mNumDofs (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mNumNewtonIterations (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mOdeTimestepImplicitCardiacMechanicsAssembler< DIM > [private]
mOutputDirectory (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mpBodyForceFunction (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mpBoundaryQuadratureRule (defined in NonlinearElasticityAssembler< DIM >)NonlinearElasticityAssembler< DIM > [protected]
mpLinearSystem (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mpPreconditionMatrixLinearSystem (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mpQuadMeshNonlinearElasticityAssembler< DIM > [protected]
mpQuadratureRule (defined in NonlinearElasticityAssembler< DIM >)NonlinearElasticityAssembler< DIM > [protected]
mPressures (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mpTractionBoundaryConditionFunction (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mSurfaceTractions (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mTotalQuadPointsImplicitCardiacMechanicsAssembler< DIM > [private]
mUsingBodyForceFunction (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mUsingTractionBoundaryConditionFunction (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
mWriteOutput (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected]
NEWTON_REL_TOL (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [protected, static]
NonlinearElasticityAssembler(QuadraticMesh< DIM > *pQuadMesh, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes, std::vector< c_vector< double, DIM > > *pFixedNodeLocations=NULL)NonlinearElasticityAssembler< DIM > [inline]
NonlinearElasticityAssembler(QuadraticMesh< DIM > *pQuadMesh, std::vector< AbstractIncompressibleMaterialLaw< DIM > * > &rMaterialLaws, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes, std::vector< c_vector< double, DIM > > *pFixedNodeLocations=NULL)NonlinearElasticityAssembler< DIM > [inline]
NUM_NODES_PER_BOUNDARY_ELEMENT (defined in NonlinearElasticityAssembler< DIM >)NonlinearElasticityAssembler< DIM > [protected, static]
NUM_NODES_PER_ELEMENT (defined in ImplicitCardiacMechanicsAssembler< DIM >)ImplicitCardiacMechanicsAssembler< DIM > [private, static]
NUM_VERTICES_PER_ELEMENT (defined in ImplicitCardiacMechanicsAssembler< DIM >)ImplicitCardiacMechanicsAssembler< DIM > [private, static]
PostNewtonStep(unsigned counter, double normResidual) (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline, protected, virtual]
rGetDeformedPosition()NonlinearElasticityAssembler< DIM > [inline]
rGetLambda()ImplicitCardiacMechanicsAssembler< DIM > [inline]
rGetPressures() (defined in NonlinearElasticityAssembler< DIM >)NonlinearElasticityAssembler< DIM > [inline]
SetFunctionalBodyForce(c_vector< double, DIM >(*pFunction)(c_vector< double, DIM > &)) (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline]
SetFunctionalTractionBoundaryCondition(std::vector< BoundaryElement< DIM-1, DIM > * > rBoundaryElements, c_vector< double, DIM >(*pFunction)(c_vector< double, DIM > &))NonlinearElasticityAssembler< DIM > [inline]
SetIntracellularCalciumConcentrations(std::vector< double > &caI)ImplicitCardiacMechanicsAssembler< DIM > [inline]
SetSurfaceTractionBoundaryConditions(std::vector< BoundaryElement< DIM-1, DIM > * > &rBoundaryElements, std::vector< c_vector< double, DIM > > &rSurfaceTractions)NonlinearElasticityAssembler< DIM > [inline]
SetWriteOutput(bool writeOutput=true) (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline]
Solve(double currentTime, double nextTime, double odeTimestep)ImplicitCardiacMechanicsAssembler< DIM > [inline]
Solve(double tol=-1.0, unsigned offset=0, unsigned maxNumNewtonIterations=INT_MAX, bool quitIfNoConvergence=true) (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline]
STENCIL_SIZE (defined in ImplicitCardiacMechanicsAssembler< DIM >)ImplicitCardiacMechanicsAssembler< DIM > [private, static]
TakeNewtonStep() (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline, protected]
TestImplicitCardiacMechanicsAssembler (defined in ImplicitCardiacMechanicsAssembler< DIM >)ImplicitCardiacMechanicsAssembler< DIM > [friend]
WriteOutput(unsigned counter) (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline]
~AbstractNonlinearElasticityAssembler() (defined in AbstractNonlinearElasticityAssembler< DIM >)AbstractNonlinearElasticityAssembler< DIM > [inline, virtual]
~ImplicitCardiacMechanicsAssembler()ImplicitCardiacMechanicsAssembler< DIM > [inline]
~NonlinearElasticityAssembler()NonlinearElasticityAssembler< DIM > [inline]


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