, including all inherited members.
| AbstractNonlinearElasticityAssembler(unsigned numDofs, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes) (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| AbstractNonlinearElasticityAssembler(unsigned numDofs, std::vector< AbstractIncompressibleMaterialLaw< DIM > * > &rMaterialLaws, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes) (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| ApplyBoundaryConditions(bool applyToMatrix) (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| AssembleOnBoundaryElement(BoundaryElement< DIM-1, DIM > &rBoundaryElement, c_matrix< double, BOUNDARY_STENCIL_SIZE, BOUNDARY_STENCIL_SIZE > &rAelem, c_vector< double, BOUNDARY_STENCIL_SIZE > &rBelem, c_vector< double, DIM > &rTraction, bool assembleResidual, bool assembleJacobian) | NonlinearElasticityAssembler< DIM > | [inline, protected, virtual] |
| AssembleOnElement(Element< DIM, DIM > &rElement, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElem, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElemPrecond, c_vector< double, STENCIL_SIZE > &rBElem, bool assembleResidual, bool assembleJacobian) | ImplicitCardiacMechanicsAssembler< DIM > | [inline, private, virtual] |
| AssembleSystem(bool assembleResidual, bool assembleJacobian) | NonlinearElasticityAssembler< DIM > | [inline, protected] |
| BOUNDARY_STENCIL_SIZE (defined in NonlinearElasticityAssembler< DIM >) | NonlinearElasticityAssembler< DIM > | [protected, static] |
| CalculateResidualNorm() (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| dTdE (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| FormInitialGuess() | NonlinearElasticityAssembler< DIM > | [inline, protected] |
| GetNumNewtonIterations() (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| GetQuadratureRule() | ImplicitCardiacMechanicsAssembler< DIM > | [inline] |
| GetTotalNumQuadPoints() | ImplicitCardiacMechanicsAssembler< DIM > | [inline] |
| ImplicitCardiacMechanicsAssembler(QuadraticMesh< DIM > *pQuadMesh, std::string outputDirectory, std::vector< unsigned > &rFixedNodes, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw=NULL) | ImplicitCardiacMechanicsAssembler< DIM > | [inline] |
| Initialise(std::vector< c_vector< double, DIM > > *pFixedNodeLocations) (defined in NonlinearElasticityAssembler< DIM >) | NonlinearElasticityAssembler< DIM > | [inline, protected] |
| mAllocatedMaterialLawMemory | ImplicitCardiacMechanicsAssembler< DIM > | [private] |
| MAX_NEWTON_ABS_TOL (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected, static] |
| mBodyForce (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mBoundaryElements | NonlinearElasticityAssembler< DIM > | [protected] |
| mCellMechSystems | ImplicitCardiacMechanicsAssembler< DIM > | [private] |
| mCurrentSolution (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mCurrentTime | ImplicitCardiacMechanicsAssembler< DIM > | [private] |
| mDeformedPosition (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mDensity (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mFixedNodeDisplacements (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mFixedNodes (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| MIN_NEWTON_ABS_TOL (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected, static] |
| mLambda | ImplicitCardiacMechanicsAssembler< DIM > | [private] |
| mLambdaLastTimeStep | ImplicitCardiacMechanicsAssembler< DIM > | [private] |
| mMaterialLaws (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mNextTime | ImplicitCardiacMechanicsAssembler< DIM > | [private] |
| mNumDofs (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mNumNewtonIterations (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mOdeTimestep | ImplicitCardiacMechanicsAssembler< DIM > | [private] |
| mOutputDirectory (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpBodyForceFunction (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpBoundaryQuadratureRule (defined in NonlinearElasticityAssembler< DIM >) | NonlinearElasticityAssembler< DIM > | [protected] |
| mpLinearSystem (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpPreconditionMatrixLinearSystem (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpQuadMesh | NonlinearElasticityAssembler< DIM > | [protected] |
| mpQuadratureRule (defined in NonlinearElasticityAssembler< DIM >) | NonlinearElasticityAssembler< DIM > | [protected] |
| mPressures (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpTractionBoundaryConditionFunction (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mSurfaceTractions (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mTotalQuadPoints | ImplicitCardiacMechanicsAssembler< DIM > | [private] |
| mUsingBodyForceFunction (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mUsingTractionBoundaryConditionFunction (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mWriteOutput (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| NEWTON_REL_TOL (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [protected, static] |
| NonlinearElasticityAssembler(QuadraticMesh< DIM > *pQuadMesh, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes, std::vector< c_vector< double, DIM > > *pFixedNodeLocations=NULL) | NonlinearElasticityAssembler< DIM > | [inline] |
| NonlinearElasticityAssembler(QuadraticMesh< DIM > *pQuadMesh, std::vector< AbstractIncompressibleMaterialLaw< DIM > * > &rMaterialLaws, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes, std::vector< c_vector< double, DIM > > *pFixedNodeLocations=NULL) | NonlinearElasticityAssembler< DIM > | [inline] |
| NUM_NODES_PER_BOUNDARY_ELEMENT (defined in NonlinearElasticityAssembler< DIM >) | NonlinearElasticityAssembler< DIM > | [protected, static] |
| NUM_NODES_PER_ELEMENT (defined in ImplicitCardiacMechanicsAssembler< DIM >) | ImplicitCardiacMechanicsAssembler< DIM > | [private, static] |
| NUM_VERTICES_PER_ELEMENT (defined in ImplicitCardiacMechanicsAssembler< DIM >) | ImplicitCardiacMechanicsAssembler< DIM > | [private, static] |
| PostNewtonStep(unsigned counter, double normResidual) (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected, virtual] |
| rGetDeformedPosition() | NonlinearElasticityAssembler< DIM > | [inline] |
| rGetLambda() | ImplicitCardiacMechanicsAssembler< DIM > | [inline] |
| rGetPressures() (defined in NonlinearElasticityAssembler< DIM >) | NonlinearElasticityAssembler< DIM > | [inline] |
| SetFunctionalBodyForce(c_vector< double, DIM >(*pFunction)(c_vector< double, DIM > &)) (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| SetFunctionalTractionBoundaryCondition(std::vector< BoundaryElement< DIM-1, DIM > * > rBoundaryElements, c_vector< double, DIM >(*pFunction)(c_vector< double, DIM > &)) | NonlinearElasticityAssembler< DIM > | [inline] |
| SetIntracellularCalciumConcentrations(std::vector< double > &caI) | ImplicitCardiacMechanicsAssembler< DIM > | [inline] |
| SetSurfaceTractionBoundaryConditions(std::vector< BoundaryElement< DIM-1, DIM > * > &rBoundaryElements, std::vector< c_vector< double, DIM > > &rSurfaceTractions) | NonlinearElasticityAssembler< DIM > | [inline] |
| SetWriteOutput(bool writeOutput=true) (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| Solve(double currentTime, double nextTime, double odeTimestep) | ImplicitCardiacMechanicsAssembler< DIM > | [inline] |
| Solve(double tol=-1.0, unsigned offset=0, unsigned maxNumNewtonIterations=INT_MAX, bool quitIfNoConvergence=true) (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| STENCIL_SIZE (defined in ImplicitCardiacMechanicsAssembler< DIM >) | ImplicitCardiacMechanicsAssembler< DIM > | [private, static] |
| TakeNewtonStep() (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| TestImplicitCardiacMechanicsAssembler (defined in ImplicitCardiacMechanicsAssembler< DIM >) | ImplicitCardiacMechanicsAssembler< DIM > | [friend] |
| WriteOutput(unsigned counter) (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| ~AbstractNonlinearElasticityAssembler() (defined in AbstractNonlinearElasticityAssembler< DIM >) | AbstractNonlinearElasticityAssembler< DIM > | [inline, virtual] |
| ~ImplicitCardiacMechanicsAssembler() | ImplicitCardiacMechanicsAssembler< DIM > | [inline] |
| ~NonlinearElasticityAssembler() | NonlinearElasticityAssembler< DIM > | [inline] |
