, including all inherited members.
| AddCellKiller(AbstractCellKiller< DIM > *pCellKiller) | TissueSimulation< DIM > | [inline] |
| AfterSolve() | TissueSimulation< DIM > | [inline, protected, virtual] |
| ApplyTissueBoundaryConditions(const std::vector< c_vector< double, DIM > > &rOldLocations) | TissueSimulation< DIM > | [inline, protected, virtual] |
| boost::serialization::access class | TissueSimulation< DIM > | [friend] |
| CalculateDividingCellCentreLocations(TissueCell *pParentCell) | TissueSimulation< DIM > | [inline, protected, virtual] |
| DoCellBirth() | TissueSimulation< DIM > | [inline, protected] |
| DoCellRemoval() | TissueSimulation< DIM > | [inline, protected] |
| GetCellCyclePhaseCount() | TissueSimulation< DIM > | [inline] |
| GetCellMutationStateCount() | TissueSimulation< DIM > | [inline] |
| GetCellTypeCount() | TissueSimulation< DIM > | [inline] |
| GetDt() | TissueSimulation< DIM > | [inline] |
| GetNodeLocation(const unsigned &rNodeIndex) | TissueSimulation< DIM > | [inline] |
| GetNumBirths() | TissueSimulation< DIM > | [inline] |
| GetNumDeaths() | TissueSimulation< DIM > | [inline] |
| GetOutputDirectory() | TissueSimulation< DIM > | [inline] |
| mAllocatedMemoryForForceCollection | TissueSimulation< DIM > | [protected] |
| mCellKillers | TissueSimulation< DIM > | [protected] |
| mDeleteTissue | TissueSimulation< DIM > | [protected] |
| mDt | TissueSimulation< DIM > | [protected] |
| mEndTime | TissueSimulation< DIM > | [protected] |
| mForceCollection | TissueSimulation< DIM > | [protected] |
| mInitialiseCells | TissueSimulation< DIM > | [protected] |
| mNoBirth | TissueSimulation< DIM > | [protected] |
| mNumBirths | TissueSimulation< DIM > | [protected] |
| mNumDeaths | TissueSimulation< DIM > | [protected] |
| mOutputCellAncestors | TissueSimulation< DIM > | [protected] |
| mOutputCellCyclePhases | TissueSimulation< DIM > | [protected] |
| mOutputCellMutationStates | TissueSimulation< DIM > | [protected] |
| mOutputCellTypes | TissueSimulation< DIM > | [protected] |
| mOutputCellVariables | TissueSimulation< DIM > | [protected] |
| mOutputDirectory | TissueSimulation< DIM > | [protected] |
| mpParams | TissueSimulation< DIM > | [protected] |
| mpRandomGenerator | TissueSimulation< DIM > | [protected] |
| mpSetupFile | TissueSimulation< DIM > | [protected] |
| mrTissue | TissueSimulation< DIM > | [protected] |
| mSamplingTimestepMultiple | TissueSimulation< DIM > | [protected] |
| mSimulationOutputDirectory | TissueSimulation< DIM > | [protected] |
| mUpdateTissue | TissueSimulation< DIM > | [protected] |
| PostSolve() | TissueSimulation< DIM > | [inline, protected, virtual] |
| rGetForceCollection() const | TissueSimulation< DIM > | [inline] |
| rGetTissue() | TissueSimulation< DIM > | [inline] |
| rGetTissue() const | TissueSimulation< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | TissueSimulation< DIM > | [inline, protected] |
| SetDt(double dt) | TissueSimulation< DIM > | [inline] |
| SetEndTime(double endTime) | TissueSimulation< DIM > | [inline] |
| SetNoBirth(bool noBirth) | TissueSimulation< DIM > | [inline] |
| SetOutputCellAncestors(bool outputCellAncestors) | TissueSimulation< DIM > | [inline] |
| SetOutputCellCyclePhases(bool outputCellCyclePhases) | TissueSimulation< DIM > | [inline] |
| SetOutputCellMutationStates(bool outputCellMutationStates) | TissueSimulation< DIM > | [inline] |
| SetOutputCellTypes(bool outputCellTypes) | TissueSimulation< DIM > | [inline] |
| SetOutputCellVariables(bool outputCellVariables) | TissueSimulation< DIM > | [inline] |
| SetOutputDirectory(std::string outputDirectory) | TissueSimulation< DIM > | [inline] |
| SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple) | TissueSimulation< DIM > | [inline] |
| SetUpdateTissueRule(bool updateTissue) | TissueSimulation< DIM > | [inline] |
| SetupSolve() | TissueSimulation< DIM > | [inline, protected, virtual] |
| Solve() | TissueSimulation< DIM > | [inline] |
| StoppingEventHasOccurred() | TissueSimulation< DIM > | [inline, protected, virtual] |
| TestCryptSimulation2d (defined in TissueSimulation< DIM >) | TissueSimulation< DIM > | [friend] |
| TestTissueSimulation3d (defined in TissueSimulation< DIM >) | TissueSimulation< DIM > | [friend] |
| TissueSimulation(AbstractTissue< DIM > &rTissue, std::vector< AbstractForce< DIM > * > forceCollection, bool deleteTissueAndForceCollection=false, bool initialiseCells=true) | TissueSimulation< DIM > | [inline] |
| UpdateNodePositions(const std::vector< c_vector< double, DIM > > &rNodeForces) | TissueSimulation< DIM > | [inline, protected, virtual] |
| WriteVisualizerSetupFile() | TissueSimulation< DIM > | [inline, protected, virtual] |
| ~TissueSimulation() | TissueSimulation< DIM > | [inline, virtual] |
