TissueSimulation< DIM > Member List

This is the complete list of members for TissueSimulation< DIM >, including all inherited members.

AddCellKiller(AbstractCellKiller< DIM > *pCellKiller)TissueSimulation< DIM > [inline]
AfterSolve()TissueSimulation< DIM > [inline, protected, virtual]
ApplyTissueBoundaryConditions(const std::vector< c_vector< double, DIM > > &rOldLocations)TissueSimulation< DIM > [inline, protected, virtual]
boost::serialization::access classTissueSimulation< DIM > [friend]
CalculateDividingCellCentreLocations(TissueCell *pParentCell)TissueSimulation< DIM > [inline, protected, virtual]
DoCellBirth()TissueSimulation< DIM > [inline, protected]
DoCellRemoval()TissueSimulation< DIM > [inline, protected]
GetCellCyclePhaseCount()TissueSimulation< DIM > [inline]
GetCellMutationStateCount()TissueSimulation< DIM > [inline]
GetCellTypeCount()TissueSimulation< DIM > [inline]
GetDt()TissueSimulation< DIM > [inline]
GetNodeLocation(const unsigned &rNodeIndex)TissueSimulation< DIM > [inline]
GetNumBirths()TissueSimulation< DIM > [inline]
GetNumDeaths()TissueSimulation< DIM > [inline]
GetOutputDirectory()TissueSimulation< DIM > [inline]
mAllocatedMemoryForForceCollectionTissueSimulation< DIM > [protected]
mCellKillersTissueSimulation< DIM > [protected]
mDeleteTissueTissueSimulation< DIM > [protected]
mDtTissueSimulation< DIM > [protected]
mEndTimeTissueSimulation< DIM > [protected]
mForceCollectionTissueSimulation< DIM > [protected]
mInitialiseCellsTissueSimulation< DIM > [protected]
mNoBirthTissueSimulation< DIM > [protected]
mNumBirthsTissueSimulation< DIM > [protected]
mNumDeathsTissueSimulation< DIM > [protected]
mOutputCellAncestorsTissueSimulation< DIM > [protected]
mOutputCellCyclePhasesTissueSimulation< DIM > [protected]
mOutputCellMutationStatesTissueSimulation< DIM > [protected]
mOutputCellTypesTissueSimulation< DIM > [protected]
mOutputCellVariablesTissueSimulation< DIM > [protected]
mOutputDirectoryTissueSimulation< DIM > [protected]
mpParamsTissueSimulation< DIM > [protected]
mpRandomGeneratorTissueSimulation< DIM > [protected]
mpSetupFileTissueSimulation< DIM > [protected]
mrTissueTissueSimulation< DIM > [protected]
mSamplingTimestepMultipleTissueSimulation< DIM > [protected]
mSimulationOutputDirectoryTissueSimulation< DIM > [protected]
mUpdateTissueTissueSimulation< DIM > [protected]
PostSolve()TissueSimulation< DIM > [inline, protected, virtual]
rGetForceCollection() const TissueSimulation< DIM > [inline]
rGetTissue()TissueSimulation< DIM > [inline]
rGetTissue() const TissueSimulation< DIM > [inline]
serialize(Archive &archive, const unsigned int version)TissueSimulation< DIM > [inline, protected]
SetDt(double dt)TissueSimulation< DIM > [inline]
SetEndTime(double endTime)TissueSimulation< DIM > [inline]
SetNoBirth(bool noBirth)TissueSimulation< DIM > [inline]
SetOutputCellAncestors(bool outputCellAncestors)TissueSimulation< DIM > [inline]
SetOutputCellCyclePhases(bool outputCellCyclePhases)TissueSimulation< DIM > [inline]
SetOutputCellMutationStates(bool outputCellMutationStates)TissueSimulation< DIM > [inline]
SetOutputCellTypes(bool outputCellTypes)TissueSimulation< DIM > [inline]
SetOutputCellVariables(bool outputCellVariables)TissueSimulation< DIM > [inline]
SetOutputDirectory(std::string outputDirectory)TissueSimulation< DIM > [inline]
SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple)TissueSimulation< DIM > [inline]
SetUpdateTissueRule(bool updateTissue)TissueSimulation< DIM > [inline]
SetupSolve()TissueSimulation< DIM > [inline, protected, virtual]
Solve()TissueSimulation< DIM > [inline]
StoppingEventHasOccurred()TissueSimulation< DIM > [inline, protected, virtual]
TestCryptSimulation2d (defined in TissueSimulation< DIM >)TissueSimulation< DIM > [friend]
TestTissueSimulation3d (defined in TissueSimulation< DIM >)TissueSimulation< DIM > [friend]
TissueSimulation(AbstractTissue< DIM > &rTissue, std::vector< AbstractForce< DIM > * > forceCollection, bool deleteTissueAndForceCollection=false, bool initialiseCells=true)TissueSimulation< DIM > [inline]
UpdateNodePositions(const std::vector< c_vector< double, DIM > > &rNodeForces)TissueSimulation< DIM > [inline, protected, virtual]
WriteVisualizerSetupFile()TissueSimulation< DIM > [inline, protected, virtual]
~TissueSimulation()TissueSimulation< DIM > [inline, virtual]


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