, including all inherited members.
| AbstractCardiacMechanicsAssembler(QuadraticMesh< DIM > *pQuadMesh, std::string outputDirectory, std::vector< unsigned > &rFixedNodes, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw) | AbstractCardiacMechanicsAssembler< DIM > | [inline] |
| AbstractNonlinearElasticityAssembler(unsigned numDofs, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| AbstractNonlinearElasticityAssembler(unsigned numDofs, std::vector< AbstractIncompressibleMaterialLaw< DIM > * > &rMaterialLaws, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| AllocateMatrixMemory() | NonlinearElasticityAssembler< DIM > | [inline, protected] |
| ApplyBoundaryConditions(bool applyToMatrix) | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| AssembleOnBoundaryElement(BoundaryElement< DIM-1, DIM > &rBoundaryElement, c_matrix< double, BOUNDARY_STENCIL_SIZE, BOUNDARY_STENCIL_SIZE > &rAelem, c_vector< double, BOUNDARY_STENCIL_SIZE > &rBelem, c_vector< double, DIM > &rTraction, bool assembleResidual, bool assembleJacobian) | NonlinearElasticityAssembler< DIM > | [inline, protected, virtual] |
| AssembleOnElement(Element< DIM, DIM > &rElement, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElem, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElemPrecond, c_vector< double, STENCIL_SIZE > &rBElem, bool assembleResidual, bool assembleJacobian) | AbstractCardiacMechanicsAssembler< DIM > | [inline, protected, virtual] |
| AssembleSystem(bool assembleResidual, bool assembleJacobian) | NonlinearElasticityAssembler< DIM > | [inline, protected, virtual] |
| BOUNDARY_STENCIL_SIZE | NonlinearElasticityAssembler< DIM > | [protected, static] |
| CalculateResidualNorm() | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| CheckOrthogonality(c_matrix< double, DIM, DIM > &rMatrix) | AbstractCardiacMechanicsAssembler< DIM > | [inline, protected] |
| ComputeResidualAndGetNorm() | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| dTdE | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| FormInitialGuess() | NonlinearElasticityAssembler< DIM > | [inline, protected, virtual] |
| GetActiveTensionAndTensionDerivs(double currentFibreStretch, unsigned currentQuadPointGlobalIndex, bool assembleJacobian, double &rActiveTension, double &rDerivActiveTensionWrtLambda, double &rDerivActiveTensionWrtDLambdaDt) | ImplicitCardiacMechanicsAssembler< DIM > | [inline, private, virtual] |
| GetNumNewtonIterations() | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| GetQuadratureRule() | AbstractCardiacMechanicsAssembler< DIM > | [inline, virtual] |
| GetTotalNumQuadPoints() | AbstractCardiacMechanicsAssembler< DIM > | [inline] |
| ImplicitCardiacMechanicsAssembler(ContractionModel contractionModel, QuadraticMesh< DIM > *pQuadMesh, std::string outputDirectory, std::vector< unsigned > &rFixedNodes, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw=NULL) | ImplicitCardiacMechanicsAssembler< DIM > | [inline] |
| Initialise(std::vector< c_vector< double, DIM > > *pFixedNodeLocations) | NonlinearElasticityAssembler< DIM > | [inline, protected] |
| IsImplicitSolver() | ImplicitCardiacMechanicsAssembler< DIM > | [inline, private, virtual] |
| mAllocatedMaterialLawMemory | AbstractCardiacMechanicsAssembler< DIM > | [protected] |
| MAX_NEWTON_ABS_TOL | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected, static] |
| mBodyForce | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mBoundaryElements | NonlinearElasticityAssembler< DIM > | [protected] |
| mConstantFibreSheetDirections | AbstractCardiacMechanicsAssembler< DIM > | [protected] |
| mContractionModelSystems | AbstractCardiacMechanicsAssembler< DIM > | [protected] |
| mCurrentSolution | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mCurrentTime | AbstractCardiacMechanicsAssembler< DIM > | [protected] |
| mDeformedPosition | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mDensity | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mFixedNodeDisplacements | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mFixedNodes | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| MIN_NEWTON_ABS_TOL | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected, static] |
| mMaterialLaws | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mNextTime | AbstractCardiacMechanicsAssembler< DIM > | [protected] |
| mNumDofs | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mNumNewtonIterations | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mOdeTimestep | AbstractCardiacMechanicsAssembler< DIM > | [protected] |
| mOutputDirectory | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpBodyForceFunction | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpBoundaryQuadratureRule | NonlinearElasticityAssembler< DIM > | [protected] |
| mpLinearSystem | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpPreconditionMatrixLinearSystem | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpQuadMesh | NonlinearElasticityAssembler< DIM > | [protected] |
| mpQuadratureRule | NonlinearElasticityAssembler< DIM > | [protected] |
| mPressures | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpTractionBoundaryConditionFunction | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mpVariableFibreSheetDirections | AbstractCardiacMechanicsAssembler< DIM > | [protected] |
| mStretches | AbstractCardiacMechanicsAssembler< DIM > | [protected] |
| mStretchesLastTimeStep | ImplicitCardiacMechanicsAssembler< DIM > | [private] |
| mSurfaceTractions | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mTotalQuadPoints | AbstractCardiacMechanicsAssembler< DIM > | [protected] |
| mUsingBodyForceFunction | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mUsingTractionBoundaryConditionFunction | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| mWriteOutput | AbstractNonlinearElasticityAssembler< DIM > | [protected] |
| NEWTON_REL_TOL | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected, static] |
| NonlinearElasticityAssembler(QuadraticMesh< DIM > *pQuadMesh, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes, std::vector< c_vector< double, DIM > > *pFixedNodeLocations=NULL) | NonlinearElasticityAssembler< DIM > | [inline] |
| NonlinearElasticityAssembler(QuadraticMesh< DIM > *pQuadMesh, std::vector< AbstractIncompressibleMaterialLaw< DIM > * > &rMaterialLaws, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes, std::vector< c_vector< double, DIM > > *pFixedNodeLocations=NULL) | NonlinearElasticityAssembler< DIM > | [inline] |
| NUM_NODES_PER_BOUNDARY_ELEMENT | NonlinearElasticityAssembler< DIM > | [protected, static] |
| NUM_NODES_PER_ELEMENT | AbstractCardiacMechanicsAssembler< DIM > | [protected, static] |
| NUM_VERTICES_PER_ELEMENT | AbstractCardiacMechanicsAssembler< DIM > | [protected, static] |
| PostNewtonStep(unsigned counter, double normResidual) | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected, virtual] |
| PrintLineSearchResult(double s, double residNorm) | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| rGetDeformedPosition() | NonlinearElasticityAssembler< DIM > | [inline, virtual] |
| rGetFibreStretches() | ImplicitCardiacMechanicsAssembler< DIM > | [inline] |
| rGetPressures() | NonlinearElasticityAssembler< DIM > | [inline] |
| SetCalciumAndVoltage(std::vector< double > &rCalciumConcentrations, std::vector< double > &rVoltages) | AbstractCardiacMechanicsAssembler< DIM > | [inline] |
| SetConstantFibreSheetDirections(const c_matrix< double, DIM, DIM > &rFibreSheetMatrix) | AbstractCardiacMechanicsAssembler< DIM > | [inline] |
| SetFunctionalBodyForce(c_vector< double, DIM >(*pFunction)(c_vector< double, DIM > &)) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| SetFunctionalTractionBoundaryCondition(std::vector< BoundaryElement< DIM-1, DIM > * > rBoundaryElements, c_vector< double, DIM >(*pFunction)(c_vector< double, DIM > &)) | NonlinearElasticityAssembler< DIM > | [inline] |
| SetSurfaceTractionBoundaryConditions(std::vector< BoundaryElement< DIM-1, DIM > * > &rBoundaryElements, std::vector< c_vector< double, DIM > > &rSurfaceTractions) | NonlinearElasticityAssembler< DIM > | [inline] |
| SetVariableFibreSheetDirections(std::string orthoFile) | AbstractCardiacMechanicsAssembler< DIM > | [inline] |
| SetWriteOutput(bool writeOutput=true) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| Solve(double time, double nextTime, double odeTimestep) | ImplicitCardiacMechanicsAssembler< DIM > | [inline, virtual] |
| NonlinearElasticityAssembler::Solve(double tol=-1.0, unsigned offset=0, unsigned maxNumNewtonIterations=INT_MAX, bool quitIfNoConvergence=true) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| STENCIL_SIZE | AbstractCardiacMechanicsAssembler< DIM > | [protected, static] |
| TakeNewtonStep() | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| TestImplicitCardiacMechanicsAssembler (defined in ImplicitCardiacMechanicsAssembler< DIM >) | ImplicitCardiacMechanicsAssembler< DIM > | [friend] |
| UpdateSolutionUsingLineSearch(Vec solution) | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| VectorSum(std::vector< double > &rX, ReplicatableVector &rY, double a, std::vector< double > &rZ) | AbstractNonlinearElasticityAssembler< DIM > | [inline, protected] |
| WriteOutput(unsigned counter) | AbstractNonlinearElasticityAssembler< DIM > | [inline] |
| ~AbstractCardiacMechanicsAssembler() | AbstractCardiacMechanicsAssembler< DIM > | [inline] |
| ~AbstractNonlinearElasticityAssembler() | AbstractNonlinearElasticityAssembler< DIM > | [inline, virtual] |
| ~ImplicitCardiacMechanicsAssembler() | ImplicitCardiacMechanicsAssembler< DIM > | [inline, virtual] |
| ~NonlinearElasticityAssembler() | NonlinearElasticityAssembler< DIM > | [inline] |
