, including all inherited members.
| AbstractCellCentreBasedTissue() | AbstractCellCentreBasedTissue< DIM > | [inline, protected] |
| AbstractCellCentreBasedTissue(std::vector< TissueCell > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellCentreBasedTissue< DIM > | [inline] |
| AbstractTissue() | AbstractTissue< DIM > | [inline, protected] |
| AbstractTissue(std::vector< TissueCell > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractTissue< DIM > | [inline] |
| AddCell(TissueCell &rNewCell, const c_vector< double, DIM > &rCellDivisionVector, TissueCell *pParentCell=NULL) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| AddNode(Node< DIM > *pNewNode) | NodeBasedTissue< DIM > | [inline, private, virtual] |
| Begin() | AbstractTissue< DIM > | [inline] |
| boost::serialization::access class | NodeBasedTissue< DIM > | [friend] |
| Clear() | NodeBasedTissue< DIM > | [inline] |
| CloseOutputFiles() | AbstractTissue< DIM > | [inline, virtual] |
| CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory) | AbstractTissue< DIM > | [inline, virtual] |
| End() | AbstractTissue< DIM > | [inline] |
| FindMaxAndMin() | NodeBasedTissue< DIM > | [inline, private] |
| GenerateCellResults(unsigned locationIndex, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| GenerateCellResultsAndWriteToFiles() | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| GetBoxCollection() | NodeBasedTissue< DIM > | [inline] |
| GetCellAncestors() | AbstractTissue< DIM > | [inline] |
| GetCellMutationStateCount() | AbstractTissue< DIM > | [inline] |
| GetDampingConstant(unsigned nodeIndex) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| GetLocationIndexUsingCell(TissueCell &rCell) | AbstractTissue< DIM > | [inline] |
| GetLocationOfCellCentre(TissueCell &rCell) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| GetMutationRegistry() | AbstractTissue< DIM > | [inline] |
| GetNode(unsigned index) | NodeBasedTissue< DIM > | [inline, virtual] |
| GetNodeCorrespondingToCell(TissueCell &rCell) | AbstractCellCentreBasedTissue< DIM > | [inline] |
| GetNumNodes() | NodeBasedTissue< DIM > | [inline, virtual] |
| GetNumRealCells() | AbstractTissue< DIM > | [inline] |
| HasMesh() | AbstractTissue< DIM > | [inline] |
| InitialiseCells() | AbstractTissue< DIM > | [inline] |
| IsCellAssociatedWithADeletedLocation(TissueCell &rCell) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| IsGhostNode(unsigned index) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| mAddedNodes | NodeBasedTissue< DIM > | [protected] |
| mCellCyclePhaseCount | AbstractTissue< DIM > | [protected] |
| mCellLocationMap | AbstractTissue< DIM > | [protected] |
| mCellProliferativeTypeCount | AbstractTissue< DIM > | [protected] |
| mCells | AbstractTissue< DIM > | [protected] |
| mDeletedNodeIndices | NodeBasedTissue< DIM > | [protected] |
| mDeleteNodes | NodeBasedTissue< DIM > | [private] |
| mLocationCellMap | AbstractTissue< DIM > | [protected] |
| mMaxSpatialPositions | NodeBasedTissue< DIM > | [private] |
| mMinSpatialPositions | NodeBasedTissue< DIM > | [private] |
| mNodePairs | NodeBasedTissue< DIM > | [private] |
| mNodes | NodeBasedTissue< DIM > | [protected] |
| mpBoundaryNodesFile | AbstractTissue< DIM > | [protected] |
| mpBoxCollection | NodeBasedTissue< DIM > | [private] |
| mpCellAgesFile | AbstractTissue< DIM > | [protected] |
| mpCellAncestorsFile | AbstractTissue< DIM > | [protected] |
| mpCellCyclePhasesFile | AbstractTissue< DIM > | [protected] |
| mpCellIdFile | AbstractTissue< DIM > | [protected] |
| mpCellMutationStatesFile | AbstractTissue< DIM > | [protected] |
| mpCellProliferativeTypesFile | AbstractTissue< DIM > | [protected] |
| mpCellVariablesFile | AbstractTissue< DIM > | [protected] |
| mpMutationStateRegistry | AbstractTissue< DIM > | [protected] |
| mpVizCellProliferativeTypesFile | AbstractTissue< DIM > | [protected] |
| mpVizNodesFile | AbstractTissue< DIM > | [protected] |
| mTissueContainsMesh | AbstractTissue< DIM > | [protected] |
| NodeBasedTissue(const std::vector< Node< DIM > * > nodes, std::vector< TissueCell > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteNodes=true) | NodeBasedTissue< DIM > | [inline] |
| NodeBasedTissue(const std::vector< Node< DIM > * > nodes, bool deleteNodes=true) | NodeBasedTissue< DIM > | [inline] |
| NodeBasedTissue(const AbstractMesh< DIM, DIM > &rMesh, std::vector< TissueCell > &rCells) | NodeBasedTissue< DIM > | [inline] |
| RemoveDeadCells() | NodeBasedTissue< DIM > | [inline, virtual] |
| rGetCellCyclePhaseCount() const | AbstractTissue< DIM > | [inline] |
| rGetCellProliferativeTypeCount() const | AbstractTissue< DIM > | [inline] |
| rGetCells() | AbstractTissue< DIM > | [inline] |
| rGetCellUsingLocationIndex(unsigned index) | AbstractTissue< DIM > | [inline] |
| rGetNodePairs() | NodeBasedTissue< DIM > | [inline] |
| rGetNodes() | NodeBasedTissue< DIM > | [inline] |
| rGetNodes() const | NodeBasedTissue< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | NodeBasedTissue< DIM > | [inline, private] |
| SetCellAncestorsToLocationIndices() | AbstractTissue< DIM > | [inline] |
| SetDefaultMutationStateOrdering() | AbstractTissue< DIM > | [inline] |
| SetNode(unsigned nodeIndex, ChastePoint< DIM > &rNewLocation) | NodeBasedTissue< DIM > | [inline, private, virtual] |
| SplitUpIntoBoxes(double cutOffLength, c_vector< double, 2 *DIM > domainSize) | NodeBasedTissue< DIM > | [inline, private] |
| TestBoxCollection (defined in NodeBasedTissue< DIM >) | NodeBasedTissue< DIM > | [friend] |
| TestNodeBasedTissue (defined in NodeBasedTissue< DIM >) | NodeBasedTissue< DIM > | [friend] |
| Update(bool hasHadBirthsOrDeaths=true) | NodeBasedTissue< DIM > | [inline, virtual] |
| UpdateNodeLocations(const std::vector< c_vector< double, DIM > > &rNodeForces, double dt) | AbstractCellCentreBasedTissue< DIM > | [inline, virtual] |
| Validate() | NodeBasedTissue< DIM > | [inline, private, virtual] |
| WriteCellIdDataToFile() | AbstractTissue< DIM > | [inline] |
| WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractTissue< DIM > | [inline] |
| WriteResultsToFiles() | AbstractTissue< DIM > | [inline, virtual] |
| WriteTimeAndNodeResultsToFiles() | AbstractTissue< DIM > | [inline] |
| ~AbstractTissue() | AbstractTissue< DIM > | [inline, virtual] |
| ~NodeBasedTissue() | NodeBasedTissue< DIM > | [inline] |
