, including all inherited members.
| AbstractCardiacMechanicsSolver(QuadraticMesh< DIM > *pQuadMesh, std::string outputDirectory, std::vector< unsigned > &rFixedNodes, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw) | AbstractCardiacMechanicsSolver< DIM > | [inline] |
| AbstractNonlinearElasticitySolver(QuadraticMesh< DIM > *pQuadMesh, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| AllocateMatrixMemory() | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| ApplyBoundaryConditions(bool applyToMatrix) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| AssembleOnBoundaryElement(BoundaryElement< DIM-1, DIM > &rBoundaryElement, c_matrix< double, BOUNDARY_STENCIL_SIZE, BOUNDARY_STENCIL_SIZE > &rAelem, c_vector< double, BOUNDARY_STENCIL_SIZE > &rBelem, c_vector< double, DIM > &rTraction, bool assembleResidual, bool assembleJacobian) | NonlinearElasticitySolver< DIM > | [inline, protected, virtual] |
| AssembleOnElement(Element< DIM, DIM > &rElement, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElem, c_matrix< double, STENCIL_SIZE, STENCIL_SIZE > &rAElemPrecond, c_vector< double, STENCIL_SIZE > &rBElem, bool assembleResidual, bool assembleJacobian) | NonlinearElasticitySolver< DIM > | [inline, protected, virtual] |
| AssembleSystem(bool assembleResidual, bool assembleJacobian) | NonlinearElasticitySolver< DIM > | [inline, protected, virtual] |
| BOUNDARY_STENCIL_SIZE | NonlinearElasticitySolver< DIM > | [protected, static] |
| CalculateResidualNorm() | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| ComputeDeformationGradientAndStretchInEachElement(std::vector< c_matrix< double, DIM, DIM > > &rDeformationGradients, std::vector< double > &rStretches) | AbstractCardiacMechanicsSolver< DIM > | [inline] |
| ComputeResidualAndGetNorm(bool allowException) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| ComputeStressAndStressDerivative(AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw, c_matrix< double, DIM, DIM > &rC, c_matrix< double, DIM, DIM > &rInvC, double pressure, unsigned elementIndex, unsigned currentQuadPointGlobalIndex, c_matrix< double, DIM, DIM > &rT, FourthOrderTensor< DIM, DIM, DIM, DIM > &rDTdE, bool computeDTdE) | AbstractCardiacMechanicsSolver< DIM > | [inline, protected, virtual] |
| CreateCmguiOutput() | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| dTdE | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| FormInitialGuess() | NonlinearElasticitySolver< DIM > | [inline, protected] |
| GetActiveTensionAndTensionDerivs(double currentFibreStretch, unsigned currentQuadPointGlobalIndex, bool assembleJacobian, double &rActiveTension, double &rDerivActiveTensionWrtLambda, double &rDerivActiveTensionWrtDLambdaDt) | ImplicitCardiacMechanicsSolver< DIM > | [inline, private, virtual] |
| GetNumNewtonIterations() | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| GetQuadratureRule() | AbstractCardiacMechanicsSolver< DIM > | [inline, virtual] |
| GetTotalNumQuadPoints() | AbstractCardiacMechanicsSolver< DIM > | [inline] |
| ImplicitCardiacMechanicsSolver(ContractionModel contractionModel, QuadraticMesh< DIM > *pQuadMesh, std::string outputDirectory, std::vector< unsigned > &rFixedNodes, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw=NULL) | ImplicitCardiacMechanicsSolver< DIM > | [inline] |
| Initialise(std::vector< c_vector< double, DIM > > *pFixedNodeLocations) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| IsImplicitSolver() | ImplicitCardiacMechanicsSolver< DIM > | [inline, private, virtual] |
| mAllocatedMaterialLawMemory | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| MAX_NEWTON_ABS_TOL | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected, static] |
| mBodyForce | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mBoundaryElements | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mConstantFibreSheetDirections | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mContractionModelSystems | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mCurrentElementFibreDirection | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mCurrentSolution | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mCurrentTime | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mDeformedPosition | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mDensity | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mFibreSheetDirectionsDefinedByQuadraturePoint | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mFixedNodeDisplacements | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mFixedNodes | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| MIN_NEWTON_ABS_TOL | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected, static] |
| mKspAbsoluteTol | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mMaterialLaws | NonlinearElasticitySolver< DIM > | [protected] |
| mNextTime | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mNumDofs | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mNumNewtonIterations | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mOdeTimestep | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mOutputDirectory | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mpBodyForceFunction | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mpBoundaryQuadratureRule | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mpCurrentElementFibreSheetMatrix | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mpLinearSystem | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mpOutputFileHandler | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mpPreconditionMatrixLinearSystem | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mpQuadMesh | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mpQuadratureRule | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mPressures | NonlinearElasticitySolver< DIM > | [protected] |
| mpTractionBoundaryConditionFunction | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mpVariableFibreSheetDirections | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mStretches | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mStretchesLastTimeStep | ImplicitCardiacMechanicsSolver< DIM > | [private] |
| mSurfaceTractions | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mTotalQuadPoints | AbstractCardiacMechanicsSolver< DIM > | [protected] |
| mUsingBodyForceFunction | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mUsingTractionBoundaryConditionFunction | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mWriteOutput | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| mWriteOutputEachNewtonIteration | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| NEWTON_REL_TOL | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected, static] |
| NonlinearElasticitySolver(QuadraticMesh< DIM > *pQuadMesh, AbstractIncompressibleMaterialLaw< DIM > *pMaterialLaw, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes, std::vector< c_vector< double, DIM > > *pFixedNodeLocations=NULL) | NonlinearElasticitySolver< DIM > | [inline] |
| NonlinearElasticitySolver(QuadraticMesh< DIM > *pQuadMesh, std::vector< AbstractIncompressibleMaterialLaw< DIM > * > &rMaterialLaws, c_vector< double, DIM > bodyForce, double density, std::string outputDirectory, std::vector< unsigned > &fixedNodes, std::vector< c_vector< double, DIM > > *pFixedNodeLocations=NULL) | NonlinearElasticitySolver< DIM > | [inline] |
| NUM_NODES_PER_BOUNDARY_ELEMENT | NonlinearElasticitySolver< DIM > | [protected, static] |
| NUM_NODES_PER_ELEMENT | AbstractCardiacMechanicsSolver< DIM > | [protected, static] |
| NUM_VERTICES_PER_ELEMENT | AbstractCardiacMechanicsSolver< DIM > | [protected, static] |
| PostNewtonStep(unsigned counter, double normResidual) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected, virtual] |
| PrintLineSearchResult(double s, double residNorm) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| rGetCurrentSolution() | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [inline] |
| rGetDeformedPosition() | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| rGetFibreStretches() | ImplicitCardiacMechanicsSolver< DIM > | [inline] |
| rGetPressures() | NonlinearElasticitySolver< DIM > | [inline] |
| SetCalciumAndVoltage(std::vector< double > &rCalciumConcentrations, std::vector< double > &rVoltages) | AbstractCardiacMechanicsSolver< DIM > | [inline] |
| SetConstantFibreSheetDirections(const c_matrix< double, DIM, DIM > &rFibreSheetMatrix) | AbstractCardiacMechanicsSolver< DIM > | [inline] |
| SetCurrentTime(double time) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [inline] |
| SetFunctionalBodyForce(c_vector< double, DIM >(*pFunction)(c_vector< double, DIM > &X, double t)) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| SetFunctionalTractionBoundaryCondition(std::vector< BoundaryElement< DIM-1, DIM > * > rBoundaryElements, c_vector< double, DIM >(*pFunction)(c_vector< double, DIM > &X, double t)) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| SetKspAbsoluteTolerance(double kspAbsoluteTolerance) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [inline] |
| SetSurfaceTractionBoundaryConditions(std::vector< BoundaryElement< DIM-1, DIM > * > &rBoundaryElements, std::vector< c_vector< double, DIM > > &rSurfaceTractions) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| SetVariableFibreSheetDirections(std::string orthoFile, bool definedPerQuadraturePoint) | AbstractCardiacMechanicsSolver< DIM > | [inline] |
| SetWriteOutput(bool writeOutput=true) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| SetWriteOutputEachNewtonIteration(bool writeOutputEachNewtonIteration=true) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [inline] |
| Solve(double time, double nextTime, double odeTimestep) | ImplicitCardiacMechanicsSolver< DIM > | [inline, virtual] |
| NonlinearElasticitySolver::Solve(double tol=-1.0, unsigned maxNumNewtonIterations=INT_MAX, bool quitIfNoConvergence=true) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| STENCIL_SIZE | AbstractCardiacMechanicsSolver< DIM > | [protected, static] |
| TakeNewtonStep() | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| TestImplicitCardiacMechanicsSolver (defined in ImplicitCardiacMechanicsSolver< DIM >) | ImplicitCardiacMechanicsSolver< DIM > | [friend] |
| UpdateSolutionUsingLineSearch(Vec solution) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| VectorSum(std::vector< double > &rX, ReplicatableVector &rY, double a, std::vector< double > &rZ) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [protected] |
| WriteCurrentDeformation(std::string fileName, int counterToAppend=-1) | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | |
| ~AbstractCardiacMechanicsSolver() | AbstractCardiacMechanicsSolver< DIM > | [inline] |
| ~AbstractNonlinearElasticitySolver() | AbstractNonlinearElasticitySolver< INCOMPRESSIBLE, DIM > | [virtual] |
| ~ImplicitCardiacMechanicsSolver() | ImplicitCardiacMechanicsSolver< DIM > | [inline, virtual] |
| ~NonlinearElasticitySolver() | NonlinearElasticitySolver< DIM > | [inline] |
