NhsContractionModel Member List

This is the complete list of members for NhsContractionModel, including all inherited members.

AbstractContractionModel()AbstractContractionModel [inline]
AbstractOdeBasedContractionModel(unsigned numStateVariables)AbstractOdeBasedContractionModel [inline]
AbstractOdeSystem(unsigned numberOfStateVariables)AbstractOdeSystem
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< std::vector< double > >
boost::serialization::access (defined in AbstractOdeSystem)AbstractOdeSystem [friend]
CalculateCalciumTrop50()NhsContractionModel [protected]
CalculateRootFunction(double time, const std::vector< double > &rY)AbstractOdeSystem [virtual]
CalculateStoppingEvent(double time, const std::vector< double > &rY)AbstractOdeSystem [virtual]
CalculateT0(double z)NhsContractionModel [protected]
ComputeDerivedQuantities(double time, const std::vector< double > &rState)AbstractParameterisedSystem< std::vector< double > > [virtual]
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< std::vector< double > >
DumpState(const std::string &rMessage, std::vector< double > Y=std::vector< double >())AbstractOdeSystem [protected]
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)NhsContractionModel [virtual]
GetActiveTension()NhsContractionModel [virtual]
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL)AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableIndex(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableUnits(unsigned index) const AbstractParameterisedSystem< std::vector< double > >
GetAnyVariableUnits(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
GetAttribute(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
GetCalciumTroponinValue()NhsContractionModel
GetDerivedQuantityIndex(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
GetDerivedQuantityUnits(unsigned index) const AbstractParameterisedSystem< std::vector< double > >
GetInitialConditions() const AbstractOdeSystem
GetNextActiveTension()NhsContractionModel [inline, virtual]
GetNumberOfAttributes() const AbstractParameterisedSystem< std::vector< double > >
GetNumberOfDerivedQuantities() const AbstractParameterisedSystem< std::vector< double > >
GetNumberOfParameters() const AbstractParameterisedSystem< std::vector< double > >
GetNumberOfStateVariables() const AbstractParameterisedSystem< std::vector< double > >
GetParameter(unsigned index) const AbstractParameterisedSystem< std::vector< double > >
GetParameter(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
GetParameterIndex(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
GetParameterUnits(unsigned index) const AbstractParameterisedSystem< std::vector< double > >
GetStateVariable(unsigned index) const AbstractParameterisedSystem< std::vector< double > >
GetStateVariable(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
GetStateVariableIndex(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
GetStateVariables()AbstractParameterisedSystem< std::vector< double > >
GetStateVariableUnits(unsigned index) const AbstractParameterisedSystem< std::vector< double > >
GetSystemInformation() const AbstractParameterisedSystem< std::vector< double > >
GetSystemName() const AbstractParameterisedSystem< std::vector< double > >
GetUseAnalyticJacobian()AbstractOdeSystem
HasAnyVariable(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
HasAttribute(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
HasDerivedQuantity(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
HasParameter(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
HasStateVariable(const std::string &rName) const AbstractParameterisedSystem< std::vector< double > >
IsStretchDependent()NhsContractionModel [inline, virtual]
IsStretchRateDependent()NhsContractionModel [inline, virtual]
mANhsContractionModel [protected, static]
mA1NhsContractionModel [protected, static]
mA2NhsContractionModel [protected, static]
mA3NhsContractionModel [protected, static]
mAlpha0NhsContractionModel [protected, static]
mAlpha1NhsContractionModel [protected, static]
mAlpha2NhsContractionModel [protected, static]
mAlpha3NhsContractionModel [protected, static]
mAlphaR1NhsContractionModel [protected, static]
mAlphaR2NhsContractionModel [protected, static]
mBeta0NhsContractionModel [protected, static]
mBeta1NhsContractionModel [protected, static]
mCalcium50refNhsContractionModel [protected, static]
mCalciumINhsContractionModel [protected]
mCalciumTrop50NhsContractionModel [protected]
mCalciumTroponinMaxNhsContractionModel [protected, static]
mDLambdaDtNhsContractionModel [protected]
mGammaNhsContractionModel [protected, static]
mK1NhsContractionModel [protected]
mK2NhsContractionModel [protected]
mKonNhsContractionModel [protected, static]
mKrefoffNhsContractionModel [protected, static]
mKZNhsContractionModel [protected, static]
mLambdaNhsContractionModel [protected]
mNNhsContractionModel [protected, static]
mNrNhsContractionModel [protected, static]
mNumberOfStateVariablesAbstractParameterisedSystem< std::vector< double > > [protected]
mParametersAbstractParameterisedSystem< std::vector< double > > [protected]
mpSystemInfoAbstractParameterisedSystem< std::vector< double > > [protected]
mStateVariablesAbstractParameterisedSystem< std::vector< double > > [protected]
mTemporaryStateVariablesAbstractOdeBasedContractionModel [protected]
mTimeAbstractOdeBasedContractionModel [protected]
mTrefNhsContractionModel [protected, static]
mUseAnalyticJacobianAbstractOdeSystem [protected]
mZpNhsContractionModel [protected, static]
NhsContractionModel()NhsContractionModel
rGetConstStateVariables() const AbstractOdeSystem
rGetDerivedQuantityNames() const AbstractParameterisedSystem< std::vector< double > >
rGetDerivedQuantityUnits() const AbstractParameterisedSystem< std::vector< double > >
rGetParameterNames() const AbstractParameterisedSystem< std::vector< double > >
rGetParameterUnits() const AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableNames() const AbstractParameterisedSystem< std::vector< double > >
rGetStateVariables()AbstractParameterisedSystem< std::vector< double > >
rGetStateVariableUnits() const AbstractParameterisedSystem< std::vector< double > >
RunAndUpdate(double startTime, double endTime, double timeStep)AbstractOdeBasedContractionModel [inline, virtual]
RunDoNotUpdate(double startTime, double endTime, double timeStep)AbstractOdeBasedContractionModel [inline, virtual]
SetAnyVariable(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetAnyVariable(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetDefaultInitialCondition(unsigned index, double initialCondition)AbstractOdeSystem
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions)AbstractOdeSystem
SetInputParameters(ContractionModelInputParameters &rInputParameters)NhsContractionModel [virtual]
SetIntracellularCalciumConcentration(double calciumConcentration)NhsContractionModel
SetParameter(const std::string &rName, double value)AbstractParameterisedSystem< std::vector< double > >
SetParameter(unsigned index, double value)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(unsigned index, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariable(const std::string &rName, double newValue)AbstractParameterisedSystem< std::vector< double > >
SetStateVariables(const std::vector< double > &rStateVariables)AbstractOdeSystem
SetStretch(double stretch)AbstractContractionModel [inline]
SetStretchAndStretchRate(double lambda, double dlambdaDt)NhsContractionModel [virtual]
TestContractionModels (defined in NhsContractionModel)NhsContractionModel [friend]
UpdateStateVariables()AbstractOdeBasedContractionModel [inline, virtual]
~AbstractContractionModel()AbstractContractionModel [inline, virtual]
~AbstractOdeSystem()AbstractOdeSystem [virtual]
~AbstractParameterisedSystem()AbstractParameterisedSystem< std::vector< double > > [virtual]


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