| AbstractCellBasedSimulation(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| AddCellKiller(boost::shared_ptr< AbstractCellKiller< SPACE_DIM > > pCellKiller) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| AddCellPopulationBoundaryCondition(boost::shared_ptr< AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, ELEMENT_DIM > > pBoundaryCondition) | OffLatticeSimulation< 2 > | |
| AddForce(boost::shared_ptr< AbstractForce< ELEMENT_DIM, ELEMENT_DIM > > pForce) | OffLatticeSimulation< 2 > | |
| AddSimulationModifier(boost::shared_ptr< AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM > > pSimulationModifier) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| ApplyBoundaries(std::map< Node< ELEMENT_DIM > *, c_vector< double, ELEMENT_DIM > > oldNodeLoctions) | OffLatticeSimulation< 2 > | protected |
| boost::serialization::access class | CryptSimulation2d | friend |
| CryptSimulation2d(AbstractCellPopulation< 2 > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | CryptSimulation2d | |
| DoCellBirth() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protectedvirtual |
| DoCellRemoval() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| GetDt() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetIdentifier() const | Identifiable | |
| GetNodeLocation(const unsigned &rNodeIndex) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetNumBirths() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetNumDeaths() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetNumericalMethod() const | OffLatticeSimulation< 2 > | |
| GetOutputCellVelocities() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputDirectory() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetOutputDivisionLocations() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetSimulationModifiers() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| GetUpdateCellPopulationRule() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| mBoundaryConditions | OffLatticeSimulation< 2 > | protected |
| mCellKillers | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mDeleteCellPopulationInDestructor | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mDt | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mEndTime | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mForceCollection | OffLatticeSimulation< 2 > | protected |
| mInitialiseCells | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mNoBirth | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mNumBirths | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mNumDeaths | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mOutputCellVelocities | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mOutputDirectory | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mOutputDivisionLocations | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mpCellVelocitiesFile | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mpDivisionLocationFile | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mpNumericalMethod | OffLatticeSimulation< 2 > | protected |
| mpVizSetupFile | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mrCellPopulation | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mSamplingTimestepMultiple | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mSimulationModifiers | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mSimulationOutputDirectory | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mUpdateCellPopulation | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| mUsingMeshBasedCellPopulation | CryptSimulation2d | protected |
| OffLatticeSimulation(AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | OffLatticeSimulation< 2 > | |
| OutputAdditionalSimulationSetup(out_stream &rParamsFile) | OffLatticeSimulation< 2 > | virtual |
| OutputSimulationParameters(out_stream &rParamsFile) | CryptSimulation2d | virtual |
| OutputSimulationSetup() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protected |
| RemoveAllCellKillers() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| RemoveAllCellPopulationBoundaryConditions() | OffLatticeSimulation< 2 > | |
| RemoveAllForces() | OffLatticeSimulation< 2 > | |
| RevertToOldLocations(std::map< Node< ELEMENT_DIM > *, c_vector< double, ELEMENT_DIM > > oldNodeLoctions) | OffLatticeSimulation< 2 > | protected |
| rGetCellPopulation() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| rGetCellPopulation() const | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| rGetForceCollection() const | OffLatticeSimulation< 2 > | |
| serialize(Archive &archive, const unsigned int version) | CryptSimulation2d | inlineprotected |
| SetBottomCellAncestors() | CryptSimulation2d | |
| SetDt(double dt) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetEndTime(double endTime) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetNoBirth(bool noBirth) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetNumericalMethod(boost::shared_ptr< AbstractNumericalMethod< ELEMENT_DIM, ELEMENT_DIM > > pNumericalMethod) | OffLatticeSimulation< 2 > | |
| SetOutputCellVelocities(bool outputCellVelocities) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetOutputDirectory(std::string outputDirectory) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetOutputDivisionLocations(bool outputDivisionLocations) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetUpdateCellPopulationRule(bool updateCellPopulation) | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| SetupSolve() | CryptSimulation2d | protectedvirtual |
| Solve() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | |
| StoppingEventHasOccurred() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protectedvirtual |
| TestCryptSimulation2dWithMeshBasedCellPopulation (defined in CryptSimulation2d) | CryptSimulation2d | friend |
| TestCryptSimulation2dWithVertexBasedCellPopulation (defined in CryptSimulation2d) | CryptSimulation2d | friend |
| UpdateCellLocationsAndTopology() | OffLatticeSimulation< 2 > | protectedvirtual |
| UpdateCellPopulation() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | protectedvirtual |
| UseJiggledBottomCells() | CryptSimulation2d | |
| WriteVisualizerSetupFile() | OffLatticeSimulation< 2 > | protectedvirtual |
| ~AbstractCellBasedSimulation() | AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM > | virtual |
| ~CryptSimulation2d() | CryptSimulation2d | virtual |
| ~Identifiable() | Identifiable | virtual |
1.8.6