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DeltaNotchSrnModel Member List
This is the complete list of members for
DeltaNotchSrnModel
, including all inherited members.
AbstractOdeSrnModel
(const AbstractOdeSrnModel &rModel)
AbstractOdeSrnModel
protected
AbstractOdeSrnModel
(unsigned stateSize, boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())
AbstractOdeSrnModel
AbstractSrnModel
(const AbstractSrnModel &rModel)
AbstractSrnModel
protected
AbstractSrnModel
()
AbstractSrnModel
AdjustOdeParameters
(double currentTime)
CellCycleModelOdeHandler
protected
virtual
boost::serialization::access
class
DeltaNotchSrnModel
friend
CellCycleModelOdeHandler
(const CellCycleModelOdeHandler &rHandler)
CellCycleModelOdeHandler
protected
CellCycleModelOdeHandler
(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())
CellCycleModelOdeHandler
CreateSrnModel
()
DeltaNotchSrnModel
virtual
DeltaNotchSrnModel
(const DeltaNotchSrnModel &rModel)
DeltaNotchSrnModel
protected
DeltaNotchSrnModel
(boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())
DeltaNotchSrnModel
GetCell
()
AbstractSrnModel
GetDelta
()
DeltaNotchSrnModel
GetDt
()
CellCycleModelOdeHandler
GetIdentifier
() const
Identifiable
GetMeanNeighbouringDelta
()
DeltaNotchSrnModel
GetNotch
()
DeltaNotchSrnModel
GetOdeSolver
() const
CellCycleModelOdeHandler
GetOdeSystem
() const
CellCycleModelOdeHandler
GetProteinConcentrations
() const
CellCycleModelOdeHandler
GetSimulatedToTime
() const
AbstractSrnModel
Initialise
()
DeltaNotchSrnModel
virtual
AbstractOdeSrnModel::Initialise
(AbstractOdeSystem *pOdeSystem)
AbstractOdeSrnModel
protected
InitialiseDaughterCell
()
AbstractSrnModel
virtual
mDt
CellCycleModelOdeHandler
protected
mFinishedRunningOdes
CellCycleModelOdeHandler
protected
mInitialConditions
AbstractOdeSrnModel
protected
mLastTime
CellCycleModelOdeHandler
protected
mpCell
AbstractSrnModel
protected
mpOdeSolver
CellCycleModelOdeHandler
protected
mpOdeSystem
CellCycleModelOdeHandler
protected
mSimulatedToTime
AbstractSrnModel
protected
mStateSize
AbstractOdeSrnModel
protected
OutputSrnModelInfo
(out_stream &rParamsFile)
AbstractSrnModel
OutputSrnModelParameters
(out_stream &rParamsFile)
DeltaNotchSrnModel
virtual
ResetForDivision
()
AbstractOdeSrnModel
virtual
serialize
(Archive &archive, const unsigned int version)
DeltaNotchSrnModel
inline
private
SetCell
(CellPtr pCell)
AbstractSrnModel
SetDt
(double timeStep)
CellCycleModelOdeHandler
SetInitialConditions
(std::vector< double > initialConditions)
AbstractOdeSrnModel
SetLastTime
(double lastTime)
CellCycleModelOdeHandler
SetOdeSystem
(AbstractOdeSystem *pOdeSystem)
CellCycleModelOdeHandler
SetProteinConcentrationsForTestsOnly
(double lastTime, std::vector< double > proteinConcentrations)
CellCycleModelOdeHandler
SetSimulatedToTime
(double simulatedToTime)
AbstractSrnModel
SetStateVariables
(const std::vector< double > &rStateVariables)
CellCycleModelOdeHandler
SimulateToCurrentTime
()
DeltaNotchSrnModel
virtual
SolveOdeToTime
(double currentTime)
CellCycleModelOdeHandler
protected
UpdateDeltaNotch
()
DeltaNotchSrnModel
~AbstractOdeSrnModel
()
AbstractOdeSrnModel
virtual
~AbstractSrnModel
()
AbstractSrnModel
virtual
~CellCycleModelOdeHandler
()
CellCycleModelOdeHandler
virtual
~Identifiable
()
Identifiable
virtual
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