DiffusionCaUpdateRule.hpp

/*

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*/

#ifndef DIFFUSIONCAUPDATERULE_HPP_
#define DIFFUSIONCAUPDATERULE_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "AbstractCaUpdateRule.hpp"
#include "CaBasedCellPopulation.hpp"

// Needed here to avoid serialization errors (on Boost<1.37)
#include "CellLabel.hpp"
#include "PottsMesh.hpp"

template<unsigned DIM>
class DiffusionCaUpdateRule : public AbstractCaUpdateRule<DIM>
{
friend class TestCaUpdateRules;

private:

    double mDiffusionParameter;

    double mDt;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCaUpdateRule<DIM> >(*this);
        archive & mDiffusionParameter;
    }

public:

    DiffusionCaUpdateRule();

    ~DiffusionCaUpdateRule();

    double EvaluateProbability(unsigned currentNodeIndex,
                               unsigned targetNodeIndex,
                               CaBasedCellPopulation<DIM>& rCellPopulation,
                               double dt,
                               double deltaX,
                               CellPtr cell
                               );

    double GetDiffusionParameter();

    void SetDiffusionParameter(double diffusionParameter);


   //    /**
//      * \todo #2066 return the time step (mDt) defined in the calculation of the probability of a cell moving to a certain site
//      */
//    double GetTimeStep();
//
//
//    /**
//      * \todo #2066 define the time step (dt) defined in the calculation of the probability of a cell moving to a certain site
//      */
//    void SetTimeStep(double dt);

    void OutputUpdateRuleParameters(out_stream& rParamsFile);
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(DiffusionCaUpdateRule)

#endif /*DIFFUSIONCAUPDATERULE_HPP_*/