00001 /* 00002 00003 Copyright (c) 2005-2014, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #ifndef SURFACEAREACONSTRAINTUPDATERULE_HPP_ 00037 #define SURFACEAREACONSTRAINTUPDATERULE_HPP_ 00038 00039 #include "ChasteSerialization.hpp" 00040 #include <boost/serialization/base_object.hpp> 00041 00042 #include "AbstractPottsUpdateRule.hpp" 00043 #include "PottsBasedCellPopulation.hpp" 00044 00045 // Needed here to avoid serialization errors (on Boost<1.37) 00046 #include "CellLabel.hpp" 00047 00054 template<unsigned DIM> 00055 class SurfaceAreaConstraintPottsUpdateRule : public AbstractPottsUpdateRule<DIM> 00056 { 00057 friend class TestPottsUpdateRules; 00058 00059 private: 00060 00066 double mDeformationEnergyParameter; 00067 00074 double mMatureCellTargetSurfaceArea; 00075 00076 friend class boost::serialization::access; 00084 template<class Archive> 00085 void serialize(Archive & archive, const unsigned int version) 00086 { 00087 archive & boost::serialization::base_object<AbstractPottsUpdateRule<DIM> >(*this); 00088 archive & mDeformationEnergyParameter; 00089 archive & mMatureCellTargetSurfaceArea; 00090 } 00091 00092 public: 00093 00097 SurfaceAreaConstraintPottsUpdateRule(); 00098 00102 ~SurfaceAreaConstraintPottsUpdateRule(); 00103 00116 double EvaluateHamiltonianContribution(unsigned currentNodeIndex, 00117 unsigned targetNodeIndex, 00118 PottsBasedCellPopulation<DIM>& rCellPopulation); 00119 00123 double GetDeformationEnergyParameter(); 00124 00130 void SetDeformationEnergyParameter(double deformationEnergyParameter); 00131 00135 double GetMatureCellTargetSurfaceArea() const; 00136 00142 void SetMatureCellTargetSurfaceArea(double matureCellTargetSurfaceArea); 00143 00149 void OutputUpdateRuleParameters(out_stream& rParamsFile); 00150 }; 00151 00152 #include "SerializationExportWrapper.hpp" 00153 EXPORT_TEMPLATE_CLASS_SAME_DIMS(SurfaceAreaConstraintPottsUpdateRule) 00154 00155 #endif /*SURFACEAREACONSTRAINTUPDATERULE_HPP_*/
1.6.2