AbstractAssemblerSolverHybrid.hpp

00001 
00002 /*
00003 
00004 Copyright (c) 2005-2015, University of Oxford.
00005 All rights reserved.
00006 
00007 University of Oxford means the Chancellor, Masters and Scholars of the
00008 University of Oxford, having an administrative office at Wellington
00009 Square, Oxford OX1 2JD, UK.
00010 
00011 This file is part of Chaste.
00012 
00013 Redistribution and use in source and binary forms, with or without
00014 modification, are permitted provided that the following conditions are met:
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00016    this list of conditions and the following disclaimer.
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00023 
00024 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00025 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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00035 */
00036 
00037 #ifndef ABSTRACTASSEMBLERSOLVERHYBRID_HPP_
00038 #define ABSTRACTASSEMBLERSOLVERHYBRID_HPP_
00039 
00040 #include "AbstractFeVolumeIntegralAssembler.hpp"
00041 #include "AbstractLinearPdeSolver.hpp"
00042 #include "NaturalNeumannSurfaceTermAssembler.hpp"
00043 
00054 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM, InterpolationLevel INTERPOLATION_LEVEL>
00055 class AbstractAssemblerSolverHybrid
00056    : public AbstractFeVolumeIntegralAssembler<ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, true, INTERPOLATION_LEVEL>
00057 {
00058 protected:
00059 
00064     NaturalNeumannSurfaceTermAssembler<ELEMENT_DIM,SPACE_DIM,PROBLEM_DIM> mNaturalNeumannSurfaceTermAssembler;
00065 
00067     BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,PROBLEM_DIM>* mpBoundaryConditions;
00068 
00069 
00070 public:
00071 
00078     AbstractAssemblerSolverHybrid(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
00079                                   BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,PROBLEM_DIM>* pBoundaryConditions)
00080         : AbstractFeVolumeIntegralAssembler<ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, true, INTERPOLATION_LEVEL>(pMesh),
00081           mNaturalNeumannSurfaceTermAssembler(pMesh,pBoundaryConditions),
00082           mpBoundaryConditions(pBoundaryConditions)
00083     {
00084         assert(pMesh);
00085         assert(pBoundaryConditions);
00086     }
00087 
00091     virtual ~AbstractAssemblerSolverHybrid()
00092     {
00093     }
00094 
00107     void SetupGivenLinearSystem(Vec currentSolution, bool computeMatrix, LinearSystem* pLinearSystem);
00108 };
00109 
00110 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM, InterpolationLevel INTERPOLATION_LEVEL>
00111 void AbstractAssemblerSolverHybrid<ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, INTERPOLATION_LEVEL>::SetupGivenLinearSystem(Vec currentSolution,
00112                                                                                                                      bool computeMatrix,
00113                                                                                                                      LinearSystem* pLinearSystem)
00114 {
00115     assert(pLinearSystem->rGetLhsMatrix() != NULL);
00116     assert(pLinearSystem->rGetRhsVector() != NULL);
00117 
00118     // Assemble the matrix and vector calling methods on AbstractFeVolumeIntegralAssembler
00119     this->SetMatrixToAssemble(pLinearSystem->rGetLhsMatrix());
00120     this->SetVectorToAssemble(pLinearSystem->rGetRhsVector(), true);
00121 
00122     if (currentSolution != NULL)
00123     {
00124         this->SetCurrentSolution(currentSolution);
00125     }
00126 
00127     if (computeMatrix)
00128     {
00129         this->Assemble();
00130     }
00131     else
00132     {
00133         this->AssembleVector();
00134     }
00135 
00136     // Add the Neumann boundary conditions. The boundary conditions put into the BoundaryConditionsContainer
00137     // are assumed to be natural Neumann BCs.
00138     mNaturalNeumannSurfaceTermAssembler.SetVectorToAssemble(pLinearSystem->rGetRhsVector(), false);
00139     mNaturalNeumannSurfaceTermAssembler.Assemble();
00140 
00141     pLinearSystem->FinaliseRhsVector();
00142     pLinearSystem->SwitchWriteModeLhsMatrix();
00143 
00144     // add Dirichlet BCs
00145     mpBoundaryConditions->ApplyDirichletToLinearProblem(*pLinearSystem, true);
00146 
00148     //mpBoundaryConditions->ApplyPeriodicBcsToLinearProblem(*pLinearSystem, true);
00149 
00150     pLinearSystem->FinaliseRhsVector();
00151     pLinearSystem->FinaliseLhsMatrix();
00152 }
00153 
00154 #endif /*ABSTRACTASSEMBLERSOLVERHYBRID_HPP_*/

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