00001 /* 00002 00003 Copyright (c) 2005-2015, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #ifndef ABSTRACTCELLBASEDSIMULATIONMODIFIER_HPP_ 00037 #define ABSTRACTCELLBASEDSIMULATIONMODIFIER_HPP_ 00038 00039 #include "ChasteSerialization.hpp" 00040 #include "ClassIsAbstract.hpp" 00041 00042 #include "AbstractCellPopulation.hpp" 00043 00047 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM=ELEMENT_DIM> 00048 class AbstractCellBasedSimulationModifier : public Identifiable 00049 { 00051 friend class boost::serialization::access; 00058 template<class Archive> 00059 void serialize(Archive & archive, const unsigned int version) 00060 { 00061 } 00062 00063 public: 00064 00068 AbstractCellBasedSimulationModifier(); 00069 00073 virtual ~AbstractCellBasedSimulationModifier(); 00074 00080 virtual void UpdateAtEndOfTimeStep(AbstractCellPopulation<ELEMENT_DIM,SPACE_DIM>& rCellPopulation) 00081 { 00082 } 00083 00089 virtual void UpdateAtEndOfOutputTimeStep(AbstractCellPopulation<ELEMENT_DIM,SPACE_DIM>& rCellPopulation) 00090 { 00091 } 00092 00099 virtual void SetupSolve(AbstractCellPopulation<ELEMENT_DIM,SPACE_DIM>& rCellPopulation, std::string outputDirectory) 00100 { 00101 } 00102 00108 virtual void UpdateAtEndOfSolve(AbstractCellPopulation<ELEMENT_DIM,SPACE_DIM>& rCellPopulation) 00109 { 00110 } 00111 00118 void OutputSimulationModifierInfo(out_stream& rParamsFile); 00119 00128 virtual void OutputSimulationModifierParameters(out_stream& rParamsFile)=0; 00129 }; 00130 00131 TEMPLATED_CLASS_IS_ABSTRACT_2_UNSIGNED(AbstractCellBasedSimulationModifier) 00132 00133 #endif /*ABSTRACTCELLBASEDSIMULATIONMODIFIER_HPP_*/