00001 /* 00002 00003 Copyright (c) 2005-2015, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #ifndef ABSTRACTHDF5CONVERTER_HPP_ 00037 #define ABSTRACTHDF5CONVERTER_HPP_ 00038 00039 #include <string> 00040 #include "AbstractTetrahedralMesh.hpp" 00041 #include "OutputFileHandler.hpp" 00042 #include "Hdf5DataReader.hpp" 00043 00044 00049 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00050 class AbstractHdf5Converter 00051 { 00052 private: 00059 void GenerateListOfDatasets(const FileFinder& rH5Folder, const std::string& rFileName); 00060 00061 protected: 00062 00064 const FileFinder& mrH5Folder; 00065 00067 boost::shared_ptr<Hdf5DataReader> mpReader; 00068 00070 unsigned mNumVariables; 00071 00073 std::string mFileBaseName; 00074 00081 std::vector<std::string> mDatasetNames; 00082 00086 unsigned mOpenDatasetIndex; 00087 00089 AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* mpMesh; 00090 00092 OutputFileHandler* mpOutputFileHandler; 00093 00098 std::string mRelativeSubdirectory; 00099 00104 unsigned mPrecision; 00105 00113 bool MoveOntoNextDataset(); 00114 00115 public: 00116 00128 AbstractHdf5Converter(const FileFinder& rInputDirectory, 00129 const std::string& rFileBaseName, 00130 AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh, 00131 const std::string& rSubdirectoryName, 00132 unsigned precision); 00133 00137 void WriteInfoFile(); 00138 00142 ~AbstractHdf5Converter(); 00143 00147 std::string GetSubdirectory(); 00148 }; 00149 00150 #endif /*ABSTRACTHDF5CONVERTER_HPP_*/