AbstractParameterisedSystem.hpp

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*/

#ifndef ABSTRACTPARAMETERISEDSYSTEM_HPP_
#define ABSTRACTPARAMETERISEDSYSTEM_HPP_

#include <vector>
#include <string>
#include <boost/shared_ptr.hpp>

#include "AbstractUntemplatedParameterisedSystem.hpp"


template<typename VECTOR>
class AbstractParameterisedSystem : public AbstractUntemplatedParameterisedSystem
{
friend class TestAbstractCvodeSystem;

private:
    std::string GetStateMessage(const std::string& message, VECTOR Y);

protected:
    VECTOR mStateVariables;

    VECTOR mParameters;

    std::string DumpState(const std::string& rMessage);

    std::string DumpState(const std::string& rMessage,
                          VECTOR Y);

    std::string DumpState(const std::string& rMessage,
                          VECTOR Y,
                          double time);

    void CheckParametersOnLoad(const std::vector<double>& rParameters,
                               const std::vector<std::string>& rParameterNames);

public:
    AbstractParameterisedSystem(unsigned numberOfStateVariables);

    //
    // State variable methods
    //

    VECTOR& rGetStateVariables();

    VECTOR GetStateVariables();

    void SetStateVariables(const VECTOR& rStateVariables);

    double GetStateVariable(unsigned index) const;

    double GetStateVariable(const std::string& rName) const;

    void SetStateVariable(unsigned index, double newValue);

    void SetStateVariable(const std::string& rName, double newValue);

    virtual void VerifyStateVariables()
    {}

    //
    // Initial condition methods
    //

    void SetDefaultInitialConditions(const VECTOR& rInitialConditions);

    void SetDefaultInitialCondition(unsigned index, double initialCondition);

    VECTOR GetInitialConditions() const;

    void ResetToInitialConditions();

    //
    // Parameter methods
    //

    double GetParameter(unsigned index) const;

    double GetParameter(const std::string& rName) const;

    void SetParameter(const std::string& rName, double value);

    void SetParameter(unsigned index, double value);

    //
    // "Any variable" methods
    //

    double GetAnyVariable(unsigned index, double time=0.0,
                          VECTOR* pDerivedQuantities=NULL);

    double GetAnyVariable(const std::string& rName, double time=0.0,
                          VECTOR* pDerivedQuantities=NULL);

    void SetAnyVariable(unsigned index, double value);

    void SetAnyVariable(const std::string& rName, double value);

    //
    // Derived quantity methods
    //

    virtual VECTOR ComputeDerivedQuantities(double time,
                                            const VECTOR& rState);

    VECTOR ComputeDerivedQuantitiesFromCurrentState(double time);
};



#endif /*ABSTRACTPARAMETERISEDSYSTEM_HPP_*/