00001 /* 00002 00003 Copyright (c) 2005-2015, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #ifndef ABSTRACTUNTEMPLATEDPARAMETERISEDSYSTEM_HPP_ 00037 #define ABSTRACTUNTEMPLATEDPARAMETERISEDSYSTEM_HPP_ 00038 00039 #include <vector> 00040 #include <string> 00041 #include <boost/shared_ptr.hpp> 00042 00043 #include "AbstractOdeSystemInformation.hpp" 00044 00053 class AbstractUntemplatedParameterisedSystem 00054 { 00055 public: 00061 AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables); 00062 00064 virtual ~AbstractUntemplatedParameterisedSystem(); 00065 00069 boost::shared_ptr<const AbstractOdeSystemInformation> GetSystemInformation() const; 00070 00074 std::string GetSystemName() const; 00075 00076 // 00077 // Attribute methods 00078 // 00079 00083 unsigned GetNumberOfAttributes() const; 00084 00089 bool HasAttribute(const std::string& rName) const; 00090 00095 double GetAttribute(const std::string& rName) const; 00096 00097 // 00098 // State variable methods 00099 // 00100 00106 unsigned GetNumberOfStateVariables() const; 00107 00111 const std::vector<std::string>& rGetStateVariableNames() const; 00112 00116 const std::vector<std::string>& rGetStateVariableUnits() const; 00117 00128 unsigned GetStateVariableIndex(const std::string& rName) const; 00129 00138 bool HasStateVariable(const std::string& rName) const; 00139 00147 std::string GetStateVariableUnits(unsigned index) const; 00148 00152 virtual void ResetToInitialConditions()=0; 00153 00154 // 00155 // Parameter methods 00156 // 00157 00161 unsigned GetNumberOfParameters() const; 00162 00166 const std::vector<std::string>& rGetParameterNames() const; 00167 00171 const std::vector<std::string>& rGetParameterUnits() const; 00172 00182 unsigned GetParameterIndex(const std::string& rName) const; 00183 00192 bool HasParameter(const std::string& rName) const; 00193 00201 std::string GetParameterUnits(unsigned index) const; 00202 00203 // 00204 // Derived quantity methods 00205 // 00206 00210 unsigned GetNumberOfDerivedQuantities() const; 00211 00215 const std::vector<std::string>& rGetDerivedQuantityNames() const; 00216 00220 const std::vector<std::string>& rGetDerivedQuantityUnits() const; 00221 00227 unsigned GetDerivedQuantityIndex(const std::string& rName) const; 00228 00237 bool HasDerivedQuantity(const std::string& rName) const; 00238 00245 std::string GetDerivedQuantityUnits(unsigned index) const; 00246 00247 // 00248 // "Any variable" methods 00249 // 00250 00259 unsigned GetAnyVariableIndex(const std::string& rName) const; 00260 00270 bool HasAnyVariable(const std::string& rName) const; 00271 00279 std::string GetAnyVariableUnits(unsigned index) const; 00280 00288 std::string GetAnyVariableUnits(const std::string& rName) const; 00289 00290 00291 protected: 00293 unsigned mNumberOfStateVariables; 00294 00301 boost::shared_ptr<AbstractOdeSystemInformation> mpSystemInfo; 00302 00303 }; 00304 00305 00306 #endif /*ABSTRACTUNTEMPLATEDPARAMETERISEDSYSTEM_HPP_*/