CellIdWriter.cpp

00001 /*
00002 
00003 Copyright (c) 2005-2015, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
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00015    this list of conditions and the following disclaimer.
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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00034 */
00035 
00036 #include "CellIdWriter.hpp"
00037 #include "AbstractCellPopulation.hpp"
00038 
00039 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00040 CellIdWriter<ELEMENT_DIM, SPACE_DIM>::CellIdWriter()
00041     : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("loggedcell.dat")
00042 {
00043     this->mVtkCellDataName = "Cell IDs";
00044 }
00045 
00046 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00047 double CellIdWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
00048 {
00049     double cell_id = pCell->GetCellId();
00050     return cell_id;
00051 }
00052 
00053 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00054 void CellIdWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
00055 {
00056     unsigned cell_id = pCell->GetCellId();
00057     unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
00058     *this->mpOutStream << " " << cell_id << " " << location_index;
00059 
00060     c_vector<double, SPACE_DIM> coords = pCellPopulation->GetLocationOfCellCentre(pCell);
00061     for (unsigned i=0; i<SPACE_DIM; i++)
00062     {
00063         *this->mpOutStream << " " << coords[i];
00064     }
00065 }
00066 
00067 // Explicit instantiation
00068 template class CellIdWriter<1,1>;
00069 template class CellIdWriter<1,2>;
00070 template class CellIdWriter<2,2>;
00071 template class CellIdWriter<1,3>;
00072 template class CellIdWriter<2,3>;
00073 template class CellIdWriter<3,3>;
00074 
00075 #include "SerializationExportWrapperForCpp.hpp"
00076 // Declare identifier for the serializer
00077 EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellIdWriter)