CellMutationStatesWriter.cpp

00001 /*
00002 
00003 Copyright (c) 2005-2015, University of Oxford.
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00034 */
00035 
00036 #include "CellMutationStatesWriter.hpp"
00037 #include "AbstractCellPopulation.hpp"
00038 
00039 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00040 CellMutationStatesWriter<ELEMENT_DIM, SPACE_DIM>::CellMutationStatesWriter()
00041     : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("results.vizmutationstates")
00042 {
00043     this->mVtkCellDataName = "Mutation states";
00044 }
00045 
00046 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00047 double CellMutationStatesWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
00048 {
00049     double mutation_state = pCell->GetMutationState()->GetColour();
00050 
00051     CellPropertyCollection collection = pCell->rGetCellPropertyCollection();
00052     CellPropertyCollection label_collection = collection.GetProperties<CellLabel>();
00053 
00054     if (label_collection.GetSize() == 1)
00055     {
00056         boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(label_collection.GetProperty());
00057         mutation_state = p_label->GetColour();
00058     }
00059 
00060     return mutation_state;
00061 }
00062 
00063 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00064 void CellMutationStatesWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
00065 {
00066     double mutation_state = pCell->GetMutationState()->GetColour();
00067 
00069     CellPropertyCollection collection = pCell->rGetCellPropertyCollection();
00070     CellPropertyCollection label_collection = collection.GetProperties<CellLabel>();
00071 
00072     if (label_collection.GetSize() == 1)
00073     {
00074         boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(label_collection.GetProperty());
00075         mutation_state = p_label->GetColour();
00076     }
00077 
00078     *this->mpOutStream << mutation_state << " ";
00079 }
00080 
00081 // Explicit instantiation
00082 template class CellMutationStatesWriter<1,1>;
00083 template class CellMutationStatesWriter<1,2>;
00084 template class CellMutationStatesWriter<2,2>;
00085 template class CellMutationStatesWriter<1,3>;
00086 template class CellMutationStatesWriter<2,3>;
00087 template class CellMutationStatesWriter<3,3>;
00088 
00089 #include "SerializationExportWrapperForCpp.hpp"
00090 // Declare identifier for the serializer
00091 EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellMutationStatesWriter)