CellProliferativePhasesWriter.cpp

00001 /*
00002 
00003 Copyright (c) 2005-2015, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
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00015    this list of conditions and the following disclaimer.
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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00034 */
00035 
00036 #include "CellProliferativePhasesWriter.hpp"
00037 #include "AbstractCellPopulation.hpp"
00038 
00039 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00040 CellProliferativePhasesWriter<ELEMENT_DIM, SPACE_DIM>::CellProliferativePhasesWriter()
00041     : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("results.vizcellphases")
00042 {
00043     this->mVtkCellDataName = "Cycle phases";
00044 }
00045 
00046 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00047 double CellProliferativePhasesWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
00048 {
00049     double phase = pCell->GetCellCycleModel()->GetCurrentCellCyclePhase();
00050     return phase;
00051 }
00052 
00053 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00054 void CellProliferativePhasesWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
00055 {
00056     double phase = pCell->GetCellCycleModel()->GetCurrentCellCyclePhase();
00057     *this->mpOutStream << phase << " ";
00058 }
00059 
00060 // Explicit instantiation
00061 template class CellProliferativePhasesWriter<1,1>;
00062 template class CellProliferativePhasesWriter<1,2>;
00063 template class CellProliferativePhasesWriter<2,2>;
00064 template class CellProliferativePhasesWriter<1,3>;
00065 template class CellProliferativePhasesWriter<2,3>;
00066 template class CellProliferativePhasesWriter<3,3>;
00067 
00068 #include "SerializationExportWrapperForCpp.hpp"
00069 // Declare identifier for the serializer
00070 EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellProliferativePhasesWriter)