CellwiseSourcePde.cpp

00001 /*
00002 
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00034 */
00035 
00036 #include "CellwiseSourcePde.hpp"
00037 #include "ApoptoticCellProperty.hpp"
00038 #include "Exception.hpp"
00039 
00040 template<unsigned DIM>
00041 CellwiseSourcePde<DIM>::CellwiseSourcePde(AbstractCellPopulation<DIM,DIM>& rCellPopulation, double coefficient)
00042     : mrCellPopulation(rCellPopulation),
00043       mCoefficient(coefficient)
00044 {
00045 }
00046 
00047 template<unsigned DIM>
00048 const AbstractCellPopulation<DIM,DIM>& CellwiseSourcePde<DIM>::rGetCellPopulation() const
00049 {
00050     return mrCellPopulation;
00051 }
00052 
00053 template<unsigned DIM>
00054 double CellwiseSourcePde<DIM>::GetCoefficient() const
00055 {
00056     return mCoefficient;
00057 }
00058 
00059 template<unsigned DIM>
00060 double CellwiseSourcePde<DIM>::ComputeConstantInUSourceTerm(const ChastePoint<DIM>& rX, Element<DIM,DIM>* pElement)
00061 {
00062     return 0.0;
00063 }
00064 
00065 template<unsigned DIM>
00066 double CellwiseSourcePde<DIM>::ComputeLinearInUCoeffInSourceTerm(const ChastePoint<DIM>& rX, Element<DIM,DIM>* pElement)
00067 {
00068     NEVER_REACHED;
00069     return 0.0;
00070 }
00071 
00072 template<unsigned DIM>
00073 double CellwiseSourcePde<DIM>::ComputeLinearInUCoeffInSourceTermAtNode(const Node<DIM>& rNode)
00074 {
00075     double coefficient = 0.0;
00076 
00077     if (mrCellPopulation.IsCellAttachedToLocationIndex(rNode.GetIndex()))
00078     {
00079         CellPtr p_cell = mrCellPopulation.GetCellUsingLocationIndex(rNode.GetIndex());
00080 
00081         bool cell_is_apoptotic = p_cell->HasCellProperty<ApoptoticCellProperty>();
00082 
00083         if (!cell_is_apoptotic)
00084         {
00085             coefficient = mCoefficient;
00086         }
00087     }
00088 
00089     return coefficient;
00090 }
00091 
00092 template<unsigned DIM>
00093 c_matrix<double,DIM,DIM> CellwiseSourcePde<DIM>::ComputeDiffusionTerm(const ChastePoint<DIM>& rX)
00094 {
00095     return identity_matrix<double>(DIM);
00096 }
00097 
00099 // Explicit instantiation
00101 
00102 template class CellwiseSourcePde<1>;
00103 template class CellwiseSourcePde<2>;
00104 template class CellwiseSourcePde<3>;
00105 
00106 // Serialization for Boost >= 1.36
00107 #include "SerializationExportWrapperForCpp.hpp"
00108 EXPORT_TEMPLATE_CLASS_SAME_DIMS(CellwiseSourcePde)

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