00001 /* 00002 00003 Copyright (c) 2005-2015, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #ifndef DIFFUSIONFORCE_HPP_ 00037 #define DIFFUSIONFORCE_HPP_ 00038 00039 #include "ChasteSerialization.hpp" 00040 #include <boost/serialization/base_object.hpp> 00041 00042 #include "AbstractForce.hpp" 00043 #include "AbstractOffLatticeCellPopulation.hpp" 00044 #include "RandomNumberGenerator.hpp" 00045 00049 template<unsigned DIM> 00050 class DiffusionForce : public AbstractForce<DIM> 00051 { 00052 private : 00053 00057 double mDiffusionConstant; 00058 00062 double mAbsoluteTemperature; 00063 00069 double mViscosity; 00070 00074 double mMechanicsCutOffLength; 00075 00079 static const double msBoltzmannConstant; 00080 00084 friend class boost::serialization::access; 00092 template<class Archive> 00093 void serialize(Archive & archive, const unsigned int version) 00094 { 00095 archive & boost::serialization::base_object<AbstractForce<DIM> >(*this); 00096 archive & mDiffusionConstant; 00097 archive & mAbsoluteTemperature; 00098 archive & mViscosity; 00099 archive & mMechanicsCutOffLength; 00100 } 00101 00102 public : 00103 00107 DiffusionForce(); 00108 00112 ~DiffusionForce(); 00113 00119 void SetDiffusionConstant(double diffusionConstant); 00120 00127 void SetAbsoluteTemperature(double absoluteTemperature); 00128 00135 void SetViscosity(double viscosity); 00136 00143 void SetCutOffLength(double cutOffLength); 00144 00150 double GetDiffusionConstant(); 00151 00157 double GetAbsoluteTemperature(); 00158 00164 double GetViscosity(); 00165 00171 double GetDiffusionScalingConstant(); 00172 00178 double GetCutOffLength(); 00179 00186 void AddForceContribution(AbstractCellPopulation<DIM>& rCellPopulation); 00187 00193 void OutputForceParameters(out_stream& rParamsFile); 00194 }; 00195 00196 #include "SerializationExportWrapper.hpp" 00197 EXPORT_TEMPLATE_CLASS_SAME_DIMS(DiffusionForce) 00198 00199 #endif /*DIFFUSIONFORCE_HPP_*/